View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_15 (Length: 441)
Name: NF19467_low_15
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 4410588 - 4410166
Alignment:
| Q |
1 |
agttatatactaaatatatggcataaaattcattagttttccttcaatgtaatagctataaatctaataagatttgaatcttctggctaagcctgaaatt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410588 |
agttatatactaaatatgtggcataaaattcattagttttccttcaatgtaatagctataaatctaataagatttgaatcttctggctaagcctgaaatt |
4410489 |
T |
|
| Q |
101 |
ctaaattaaaacaaccatgtttatagaggaaaaacttaaataattaagtttagtaaagagggccaatagtcctcattattatgacttatggaaaaaatta |
200 |
Q |
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| T |
4410488 |
ctaaattaaaacaaccatgtttatagaggaaaaacttaaataattaagtttagtagagagggccaatagtcctaattattatgacttatggaaaaaatta |
4410389 |
T |
|
| Q |
201 |
ctagaccaaagaaaatcagaaactttggggtattgaattgaaacttcctcaaatataggttaacatgaaatcacatgcatggcatgtgaacacaagtgaa |
300 |
Q |
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| T |
4410388 |
caagaccaaagaaaatcagaaactttggggtattgaattgaaacttcctcaaatataggttaacatgaaatcacatgcatggcatgtgaacacaagtgaa |
4410289 |
T |
|
| Q |
301 |
agctaattaagaaacagttagttatgtagatttaaacttgtctcgatcgtttttgaaaagattaagatacagagaagagaggagttattagtgagagatc |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410288 |
agctaattaagaaacagttaattatgtagatttaaacttgtctcaatcgtctttgaaaagattaagatacagagaagagaggagttattagtgagagatc |
4410189 |
T |
|
| Q |
401 |
acaccttaaggagacacaactta |
423 |
Q |
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||||||||||||||||||||||| |
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| T |
4410188 |
acaccttaaggagacacaactta |
4410166 |
T |
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