View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_17 (Length: 407)
Name: NF19467_low_17
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Original strand, 49026154 - 49026536
Alignment:
| Q |
8 |
tgaaatgaaccagttgtcttgaattgagatccaattatctttaaannnnnnnnnnnnngtctttatggtcaaaaaggtcatagtaacaacttaacctgat |
107 |
Q |
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| T |
49026154 |
tgaaatgaaccagttgtcttgaattgagatccaattatctttaaatttttatttttttgtctttatggtcaaaaaggtcatagtaacaacttaacctgat |
49026253 |
T |
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| Q |
108 |
atgaataaattaattctattatagtacaatttctgatacctgcatggctatgggagaatgggtggaaaatccacacagagaatctgctcttagcgacgtc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49026254 |
atgaataaattaattctattatagtacaatttctgatacctgcatggctatgggagaatgggtggaaaatccacacagagaatctgctcttagcgacgtc |
49026353 |
T |
|
| Q |
208 |
cttccatgtgttgatcaaagaaccacaaacaaaacactttttcaaagcaaacaagtcgtcaccaatattgcaaatattgtcaacactgtcatctatacta |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49026354 |
cttccatgcgttgatcaaagaaccacaaacaaaacactttttcaaagcaaacaagtcgtcaccaatattgcaaatattgtcaacactgtcatctatacta |
49026453 |
T |
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| Q |
308 |
ctgcaaacgtaaatgcaacaaaaggtcatccaggtttttacaatcagtctgggcctccaatgccgccactatgctatcccttt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49026454 |
ctgcaaacgtaaatgcaacaaaaggtcatccaggtttttacaatcagtctgggcctccaatgccgccactatgctatcccttt |
49026536 |
T |
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