View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19467_low_19 (Length: 402)

Name: NF19467_low_19
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19467_low_19
NF19467_low_19
[»] chr3 (23 HSPs)
chr3 (135-282)||(13844336-13844484)
chr3 (20-225)||(10516664-10516869)
chr3 (99-225)||(10657964-10658091)
chr3 (20-116)||(11782667-11782763)
chr3 (280-389)||(11782995-11783101)
chr3 (280-366)||(13844105-13844186)
chr3 (136-205)||(10183408-10183478)
chr3 (232-280)||(11782775-11782823)
chr3 (168-203)||(10104080-10104115)
chr3 (168-203)||(10214952-10214987)
chr3 (168-203)||(10223693-10223728)
chr3 (170-203)||(10031184-10031217)
chr3 (166-198)||(10256544-10256576)
chr3 (170-201)||(9837889-9837920)
chr3 (170-201)||(9848767-9848798)
chr3 (168-203)||(10076350-10076385)
chr3 (166-201)||(10180432-10180467)
chr3 (174-225)||(10662679-10662730)
chr3 (46-88)||(10658089-10658130)
chr3 (170-199)||(10126129-10126158)
chr3 (134-222)||(10541088-10541177)
chr3 (166-198)||(10028874-10028906)
chr3 (166-198)||(10123775-10123807)
[»] chr5 (1 HSPs)
chr5 (168-203)||(26793535-26793570)
[»] chr4 (1 HSPs)
chr4 (23-67)||(17853611-17853655)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 135 - 282
Target Start/End: Original strand, 13844336 - 13844484
Alignment:
Q  135 taaaggtagattcaagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacatatggaaaa 233  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  13844336 taaaggtagactcaagaagacttatttgttgtgtaagaaacaaaatttgaaagctggaaagcatagctcataaatggttaatgaacccacatagggaaaa 13844435  T
Q  234 gagtaaacactctccaattaaaaattgccattggcatttgtggacttaa 282  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  13844436 gagtaaacaccgtccaattaaaaattgccattggcatttgtggacttaa 13844484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 10516869 - 10516664
Alignment:
Q  20 agctgcagccatgtttgcttggtaaagtaaattagcaaggaagaaagttgtaaatgaagttttgagagannnnnnnngaagaaatgtgaatggatacgat 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||        ||||| ||||||||||||||  |    
T  10516869 agctgcagccatgtttgcttggtaaagtaagttagcaaggaagaaagtt-taaatgatgttttgagagaatttttttgaagatatgtgaatggatacagt 10516771  T
Q  120 aatgtttttgtatggtaaaggtagattcaagaagacttatttg-tgcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatgga 218  Q
    |||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||  | || ||| ||||    
T  10516770 aatgtttttggatggtaaaggtagactcaggaagacttatttgttgcgtaagaaacaaaatttgaaagctggaaagcataggtcatcagtgattactgga 10516671  T
Q  219 cccacat 225  Q
    |||||||    
T  10516670 cccacat 10516664  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 10658091 - 10657964
Alignment:
Q  99 agaaatgtgaatggatacgataatgtttttgtatggtaaaggtagattcaagaagacttatttg-tgcgtaagaaacaaaatttgaaagctggaaagcaa 197  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10658091 agaaatgtgaatggatacagtaatgtttttggatggtaaaggtagactcaagaagacttatttgttgcgtaagaaacaaaatttaaaagctggaaagcaa 10657992  T
Q  198 agctcacaaatggttaatggacccacat 225  Q
    || |||  | || |||||||||||||||    
T  10657991 aggtcatcagtgattaatggacccacat 10657964  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 11782667 - 11782763
Alignment:
Q  20 agctgcagccatgtttgcttggtaaagtaaattagcaaggaagaaagttgtaaatgaagttttgagagannnnnnnngaagaaatgtgaatggatac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||        ||||||||||||||||||||    
T  11782667 agctgcagccatgtttgcttggtaaagtaaattagcaaggaagtaagttgtaaataaagttttgagagaatttttttgaagaaatgtgaatggatac 11782763  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 11782995 - 11783101
Alignment:
Q  280 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgagagaataccaaatagttgcaaaatgcatttgatgcctttccacaag 379  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||| ||| |||||| |||| ||||  |||| ||||| ||| ||||||||||    
T  11782995 taataagtaaataaatcaaattaagaaatatataattagcaagacgtgtattaaga-aatacctaataattgc--aatgtatttgctgcttttccacaag 11783091  T
Q  380 tctttcatct 389  Q
    ||||||||||    
T  11783092 tctttcatct 11783101  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 13844105 - 13844186
Alignment:
Q  280 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgagagaataccaaatagttgcaaaatgcatttgat 366  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||  |||||||||||||| ||||  ||||||||||||    
T  13844105 taataagtaaataaatcaatttaagaa-tatataattaccaagacgtgtatt--gagaataccaaataattgc--aatgcatttgat 13844186  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 10183478 - 10183408
Alignment:
Q  136 aaaggtagattcaagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcaca 205  Q
    ||||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||    
T  10183478 aaaggtagactcaagaagacttatttgttgggtatgaaactaaatttgaaagctggaaagcaaagctcaca 10183408  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 11782775 - 11782823
Alignment:
Q  232 aagagtaaacactctccaattaaaaattgccattggcatttgtggactt 280  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11782775 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 11782823  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 10104115 - 10104080
Alignment:
Q  168 aagaaacaaaatttgaaagctggaaagcaaagctca 203  Q
    ||||||||||||||||||||||||||||||||||||    
T  10104115 aagaaacaaaatttgaaagctggaaagcaaagctca 10104080  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 10214987 - 10214952
Alignment:
Q  168 aagaaacaaaatttgaaagctggaaagcaaagctca 203  Q
    ||||||||||||||||||||||||||||||||||||    
T  10214987 aagaaacaaaatttgaaagctggaaagcaaagctca 10214952  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 10223728 - 10223693
Alignment:
Q  168 aagaaacaaaatttgaaagctggaaagcaaagctca 203  Q
    ||||||||||||||||||||||||||||||||||||    
T  10223728 aagaaacaaaatttgaaagctggaaagcaaagctca 10223693  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 10031217 - 10031184
Alignment:
Q  170 gaaacaaaatttgaaagctggaaagcaaagctca 203  Q
    ||||||||||||||||||||||||||||||||||    
T  10031217 gaaacaaaatttgaaagctggaaagcaaagctca 10031184  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 10256576 - 10256544
Alignment:
Q  166 gtaagaaacaaaatttgaaagctggaaagcaaa 198  Q
    |||||||||||||||||||||||||||||||||    
T  10256576 gtaagaaacaaaatttgaaagctggaaagcaaa 10256544  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 9837920 - 9837889
Alignment:
Q  170 gaaacaaaatttgaaagctggaaagcaaagct 201  Q
    ||||||||||||||||||||||||||||||||    
T  9837920 gaaacaaaatttgaaagctggaaagcaaagct 9837889  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 9848798 - 9848767
Alignment:
Q  170 gaaacaaaatttgaaagctggaaagcaaagct 201  Q
    ||||||||||||||||||||||||||||||||    
T  9848798 gaaacaaaatttgaaagctggaaagcaaagct 9848767  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 10076385 - 10076350
Alignment:
Q  168 aagaaacaaaatttgaaagctggaaagcaaagctca 203  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10076385 aagaaacaaaatttgaaagctggaaagtaaagctca 10076350  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 10180467 - 10180432
Alignment:
Q  166 gtaagaaacaaaatttgaaagctggaaagcaaagct 201  Q
    |||||||||||||||||||||||||| |||||||||    
T  10180467 gtaagaaacaaaatttgaaagctggagagcaaagct 10180432  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 10662730 - 10662679
Alignment:
Q  174 caaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacat 225  Q
    |||||||||||||||||||||||||| |||  | || |||||||||||||||    
T  10662730 caaaatttgaaagctggaaagcaaagttcatcagtgattaatggacccacat 10662679  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 10658130 - 10658089
Alignment:
Q  46 gtaaattagcaaggaagaaagttgtaaatgaagttttgagaga 88  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  10658130 gtaaattagcaaggaagaaagtt-taaatgatgttttgagaga 10658089  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 10126158 - 10126129
Alignment:
Q  170 gaaacaaaatttgaaagctggaaagcaaag 199  Q
    ||||||||||||||||||||||||||||||    
T  10126158 gaaacaaaatttgaaagctggaaagcaaag 10126129  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 10541177 - 10541088
Alignment:
Q  134 gtaaaggtagattcaagaagacttatttgtgcg-taagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggaccca 222  Q
    ||||| ||||| |||||||||||| |||||  | ||||||||||| || |||||||||||| ||| ||| || | || ||||||||||||    
T  10541177 gtaaacgtagactcaagaagacttgtttgttaggtaagaaacaaagttagaaagctggaaaacaaggcttaccattgtttaatggaccca 10541088  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 10028906 - 10028874
Alignment:
Q  166 gtaagaaacaaaatttgaaagctggaaagcaaa 198  Q
    |||||||||||||||||||||||| ||||||||    
T  10028906 gtaagaaacaaaatttgaaagctgaaaagcaaa 10028874  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 10123807 - 10123775
Alignment:
Q  166 gtaagaaacaaaatttgaaagctggaaagcaaa 198  Q
    ||||||||||| |||||||||||||||||||||    
T  10123807 gtaagaaacaacatttgaaagctggaaagcaaa 10123775  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 26793570 - 26793535
Alignment:
Q  168 aagaaacaaaatttgaaagctggaaagcaaagctca 203  Q
    ||||||||||||||||||||||||||||||||||||    
T  26793570 aagaaacaaaatttgaaagctggaaagcaaagctca 26793535  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 17853611 - 17853655
Alignment:
Q  23 tgcagccatgtttgcttggtaaagtaaattagcaaggaagaaagt 67  Q
    ||||||||| |||| |||||||||||||  |||||||||||||||    
T  17853611 tgcagccatatttgattggtaaagtaaagcagcaaggaagaaagt 17853655  T

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