View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_2 (Length: 642)
Name: NF19467_low_2
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 314 - 564
Target Start/End: Complemental strand, 35248176 - 35247927
Alignment:
| Q |
314 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatg |
413 |
Q |
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| T |
35248176 |
gtaatacgaatcctgtgtgttctttgtagttttcaaaactttctgtgtgattacttcaagaagaagggattgtcaaacactgctaagattttcaaaaatg |
35248077 |
T |
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| Q |
414 |
aagctcatgttaccggacatattccccctggtatgcttaattttgcacccttttgctaatttttctttattcattttacccaaaaaactgtttcttctat |
513 |
Q |
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|||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
35248076 |
aagctcgagtttccggacatattctccctggtatgcttaattttgcacccttttgctaatttttctttattcattttaccca-aaaactgtttcttcttt |
35247978 |
T |
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| Q |
514 |
gatgctccttgcattatactattcatttgccttataatatggataattgag |
564 |
Q |
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| T |
35247977 |
gatgctccttgcattatactattcatttgccttataatatggataattgag |
35247927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 35248476 - 35248218
Alignment:
| Q |
19 |
tgacaatccaaaaagaaaccaacnnnnnnnnnctaaccagacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgactctgcatg |
118 |
Q |
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| T |
35248476 |
tgacaatccaaaaacaaaccaacaaaaaaaaactaaccacacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgactctgcatg |
35248377 |
T |
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| Q |
119 |
gtcactcgctattttcttgcagtacttcactttctctcctttcattttctttcattaatcatcttcttcatctaagtgcaacaaccatttcctttaacat |
218 |
Q |
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| T |
35248376 |
gtcactcgctattgtcttgcagtacttcactttctctcctttaattttctttcattaatcatcttcttcatctaagtgcaagaaccatttcctttaacat |
35248277 |
T |
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| Q |
219 |
gg---------acccaaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
268 |
Q |
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| T |
35248276 |
ggatacaaaaaatcccaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
35248218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 35254942 - 35254716
Alignment:
| Q |
51 |
ctaaccagacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgactctgcatggtcactcgctattttcttgcagtacttcactt |
150 |
Q |
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| T |
35254942 |
ctaaccacacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgactctgcatggtcactcgctattgtcttgcagtacttcactt |
35254843 |
T |
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| Q |
151 |
tctctcctttcattttctttcattaatcatcttcttcatctaagtgcaacaaccatttcctttaacatgg---------acccaaaagaagaactgtgag |
241 |
Q |
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| T |
35254842 |
tctctccttttattttctttcattaatcatcttcttcatctaagtgcaagaaccatttcctttaacatggatacaaaaaatcccaaagaagaactgtgag |
35254743 |
T |
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| Q |
242 |
tagagtacaatgctgcatgcatgcatg |
268 |
Q |
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| T |
35254742 |
tagagtacaatgctgcatgcatgcatg |
35254716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 314 - 445
Target Start/End: Complemental strand, 35254674 - 35254543
Alignment:
| Q |
314 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35254674 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttcaaaaatg |
35254575 |
T |
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| Q |
414 |
aagctcatgttaccggacatattccccctggt |
445 |
Q |
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| T |
35254574 |
aagctcatgttaccggacattttccccctggt |
35254543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 35272724 - 35272626
Alignment:
| Q |
327 |
tgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatgaagctcatgtta |
425 |
Q |
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|||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||| | | ||||| ||||||| ||||||||||||| |||| |
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| T |
35272724 |
tgtgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtta |
35272626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 35279442 - 35279400
Alignment:
| Q |
230 |
aagaactgtgagtagagtacaatgctgcatgcatgcatgcatg |
272 |
Q |
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| T |
35279442 |
aagaactgtgagtagagtacaatgctgcatgcatgcatgcatg |
35279400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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