View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_22 (Length: 374)
Name: NF19467_low_22
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 51264764 - 51264417
Alignment:
| Q |
1 |
ttgctatacaactgcttctgtgatttccgatatcaatcaaattaacaatctgctcttctgtaatgtgcgattaacaaaagtaagtgactgagctatactg |
100 |
Q |
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| T |
51264764 |
ttgctatacaactgcttctgtgatttgcgatatcaatcaaattaaccatctgctcttctgtaatgtgcgattaacaaaagtaa-----------atactg |
51264676 |
T |
|
| Q |
101 |
gttttctgcaattgggtccaatttgttgaaggttttctctcctttgttgtgagagcttttgtgtttctcttcttgtaagagtttgtggtgctggtacaat |
200 |
Q |
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| T |
51264675 |
gttttctgcaattgggtccaatt-gttgaaggttttctctcctttgttgtgagagcttttgtgtttctcttcttgtaagagtttgtggtgctggtacaac |
51264577 |
T |
|
| Q |
201 |
gacagaagtgagtttggaagacttatcattaagtgacgatgaaggactaagttttgacattgaggaggaagagagttct-aacatgatcctcgcccatgc |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
51264576 |
gacataagtgagtttggaagacttatcattaagtgatgatgaaggactaagttttgacattgaggaggaagagagttctaaacatgatcctcgtccatgc |
51264477 |
T |
|
| Q |
300 |
ttagacggccgttttattatcaatcgtcctattcaacttaaggagatgaagttacggatg |
359 |
Q |
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| T |
51264476 |
ttagacggccgttttcttgtcaatcgtcctattcaacttaaggagatgaatatacggatg |
51264417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 7122231 - 7122373
Alignment:
| Q |
151 |
gagagcttttgtgtttctcttcttgtaagagtttgtggtgctggtacaatgacagaagtgagtttggaagacttatcattaagtgacgatgaaggactaa |
250 |
Q |
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| T |
7122231 |
gagagcttttgtgtttctcttcttgtaggagtttgttgtgctggtacaatgaccgaggtgagattggacgacttatcactaagtgatgatgaaggactga |
7122330 |
T |
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| Q |
251 |
gttttgacattgaggaggaagagagttct-aacatgatcctcg |
292 |
Q |
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| T |
7122331 |
gttttgacattgaggaggaagaaagttctgaacatgatcctcg |
7122373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 43323056 - 43322987
Alignment:
| Q |
127 |
tgaaggttttctctcctttgttgtgagagcttttgtgtttctcttcttgtaagagtttgtggtgctggta |
196 |
Q |
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| T |
43323056 |
tgaaggttttctctccgttgttgtgagagtttttgtgtttctcttcttgtaagagtttgtagtgctggta |
43322987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 24600675 - 24600740
Alignment:
| Q |
127 |
tgaaggttttctctcctttgttgtgagagcttttgtgtttctcttcttgtaagagtttgtggtgct |
192 |
Q |
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| T |
24600675 |
tgaaggttttctctccatcattgtgagagcttttgtgtttctcttcctgtaagagactgtggtgct |
24600740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 24600759 - 24600858
Alignment:
| Q |
193 |
ggtacaatgacagaagtgagtttggaagacttatcattaagtgacgatgaaggactaagttttgacattgaggaggaagagagttct-aacatgatcctc |
291 |
Q |
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||||| |||||||| ||| |||||||||||||||| | ||||| ||||| ||| | ||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
24600759 |
ggtacgatgacagagatgaatttggaagacttatcactgagtgatgatgagggattgagtttcaacattgaggaggaagggagttctgaacatgatcctc |
24600858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 12274542 - 12274474
Alignment:
| Q |
127 |
tgaaggttttctctcctttgttgtgagagcttttgtgtttctcttcttgtaagagtttgtggtgctggt |
195 |
Q |
| |
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| T |
12274542 |
tgaaggttttctctccgtctttgtgagagcatttgtgtttctcttcctctaagattttgtggtgctggt |
12274474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 19797473 - 19797528
Alignment:
| Q |
127 |
tgaaggttttctctcc-tttgttgtgagagcttttgtgtttctcttcttgtaagag |
181 |
Q |
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| T |
19797473 |
tgaaggttttctctccattttttgtgagagcttttgtgtttctcttcctgtaagag |
19797528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 19797580 - 19797727
Alignment:
| Q |
213 |
tttggaagacttatcattaagtgacgatgaaggactaagttttgacattgaggaggaagagagttct-aacatgatcctcgcccatgcttagacggccgt |
311 |
Q |
| |
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|||||||||||||||| | ||||| || || ||||| ||||| || || |||||| |||||||| || |||||||||||||| || || | |||||| |
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| T |
19797580 |
tttggaagacttatcactgagtgatgacgatggactgagtttcgatatcgaggagtaagagagtgctgaacatgatcctcgcttgtgtttggtaggccgt |
19797679 |
T |
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| Q |
312 |
tttattatcaatcgtcctattcaacttaaggagatgaagttacggatg |
359 |
Q |
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||| || |||| ||||| | | ||||||||||||||| |||||||| |
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| T |
19797680 |
tttcttgtcaacagtcctgtccgacttaaggagatgaaaatacggatg |
19797727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 27259026 - 27259105
Alignment:
| Q |
194 |
gtacaatgacagaagtgagtttggaagacttatcattaagtgacgatgaaggactaagttttgacattgaggaggaagag |
273 |
Q |
| |
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|||| ||| |||| |||| |||| | ||||||||| | ||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
27259026 |
gtacgatggcagaggtgaatttgaaggacttatcactgagtgatgatgagggactaagttttgacattgtggaggaagag |
27259105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 27258958 - 27258998
Alignment:
| Q |
147 |
ttgtgagagcttttgtgtttctcttcttgtaagagtttgtg |
187 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||| |
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| T |
27258958 |
ttgtgagagcttttgtgtttcttttcttgtaagagtgtgtg |
27258998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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