View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_26 (Length: 337)
Name: NF19467_low_26
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 24 - 322
Target Start/End: Original strand, 33499048 - 33499354
Alignment:
| Q |
24 |
agtatattgaaattgatttgatgaatgtgatgacgaacattaaaagagcctaagaataaaaccacaatgtccgactttcatgtcttggatgtaaacgtgt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33499048 |
agtatattgaaattgatttgatgaatgtgatgacgaacattaaaagagcctaagaataaaacaacaatgtccgactttcatgtcttggatgtaaacgtgt |
33499147 |
T |
|
| Q |
124 |
cttcattctcagctggaaaattctagtggcaaaagttgttgctgaaaatt--tgagataagagaaagtagttttgctcaaca------agaaagtagttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33499148 |
cttcattctcagctggaaaattctagtggcaaaaattgttgctgaaaatttgtgagataagagaaagtagttttgctcaacaagaaagagaaagtagttt |
33499247 |
T |
|
| Q |
216 |
tgattatatacacaacatattatatcttacatccaattgtataaccaaatccatctctaatcctaagtctctaataaaagtataaaacaatgattatgag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499248 |
tgattatatacacaacatattatatcttacatccaattgtataaccaaatccatctctaatcctaagtctctaataaaagtataaaacaatgattatgag |
33499347 |
T |
|
| Q |
316 |
ttctaga |
322 |
Q |
| |
|
||||||| |
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|
| T |
33499348 |
ttctaga |
33499354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37522831 - 37522860
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtatat |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
37522831 |
tgcttatattatgggacggagggagtatat |
37522860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 20123951 - 20123981
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtatatt |
31 |
Q |
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|
||||||||||||||||||||||||||||||| |
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|
| T |
20123951 |
tgcttatattatgggacggagggagtatatt |
20123981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 25944465 - 25944435
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtatatt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
25944465 |
tgcttatattatgggacggagggagtatatt |
25944435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6787263 - 6787293
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtatatt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
6787263 |
tgcttatattatgggacggagggagtatatt |
6787293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15959912 - 15959940
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtata |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
15959912 |
tgcttatattatgggacggagggagtata |
15959940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 43667543 - 43667571
Alignment:
| Q |
3 |
cttatattatgggacggagggagtatatt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
43667543 |
cttatattatgggacggagggagtatatt |
43667571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2229164 - 2229135
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtatat |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
2229164 |
tgcttatattatgggacggagggagtatat |
2229135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 21529844 - 21529873
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtatat |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
21529844 |
tgcttatattatgggacggagggagtatat |
21529873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6110441 - 6110469
Alignment:
| Q |
1 |
tgcttatattatgggacggagggagtata |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
6110441 |
tgcttatattatgggacggagggagtata |
6110469 |
T |
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