View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19467_low_28 (Length: 317)
Name: NF19467_low_28
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_28 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 55325572 - 55325813
Alignment:
| Q |
16 |
atacagtcgtaaaatactataatgcnnnnnnncgcaaacagaccagagtttattatcgatgacactgaaggtgctcatggatggtcctttgcaaacattg |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
55325572 |
atacagtcgtaaaatactataatgcaaaaaaacgcaaacagaccagagtttattatcgatgacactgaaggtgctcatg-atggtcctttgcaaacattg |
55325670 |
T |
|
| Q |
116 |
aattggggactaaactacaaacaccagaactgtagcctatttaatttaagttaatgccaaagcaacttttagaagnnnnnnnttcactgtgttaaagaac |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
55325671 |
aagtggggactaaactacaaacaccagaactgtagcctatctaatttaagttaatgccaaagcaacttttagaagaaaaaaattcattgtgttaaagaac |
55325770 |
T |
|
| Q |
216 |
tcgattgaaggatttgtgtaattaatctaattgtttgtgaaat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55325771 |
tcgattgaaggatttgtgtaattaatctaattgtttgtgaaat |
55325813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 40929562 - 40929604
Alignment:
| Q |
198 |
ttcactgtgttaaagaactcgattgaaggatttgtgtaattaa |
240 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40929562 |
ttcattgtgttaaagaactcgatcgaaggatttgtgtaattaa |
40929604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 199 - 317
Target Start/End: Original strand, 34440964 - 34441082
Alignment:
| Q |
199 |
tcactgtgttaaagaactcgattgaaggatttgtgtaattaatctaattgtttgtgaaattactctgaaatttcaccaacttgattcactagccaaataa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| | || |
|
|
| T |
34440964 |
tcactgtgttaaagaactcgattgaaggatttgtgtaattaatctaattgattgtgaaattactctgaaatttcaccaacttgtttcattagccacagaa |
34441063 |
T |
|
| Q |
299 |
tataaaagcaaagaattaa |
317 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34441064 |
tataaaagcaaagaattaa |
34441082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 34440884 - 34440917
Alignment:
| Q |
157 |
taatttaagttaatgccaaagcaacttttagaag |
190 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
34440884 |
taattgaagttaatgccaaagcaacttttagaag |
34440917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 32029398 - 32029337
Alignment:
| Q |
100 |
tcctttgcaaacattgaattggggactaaactacaaacaccagaactgtagcctatttaatt |
161 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32029398 |
tcctttgcaaacattgaagtggggactaaactacaaacaccagaactgtagcctatctaatt |
32029337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 44917876 - 44917952
Alignment:
| Q |
210 |
aagaactcgattgaaggatttgtgtaattaatctaattgtttgtgaaattactctgaaatttcaccaacttgattca |
286 |
Q |
| |
|
||||| || |||||||||||||| || || |||||||||| | | | || ||||||||||||||||| || |||||| |
|
|
| T |
44917876 |
aagaattcaattgaaggatttgtctatttcatctaattgtgtataagatcactctgaaatttcaccagctggattca |
44917952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University