View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19467_low_3 (Length: 639)

Name: NF19467_low_3
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19467_low_3
NF19467_low_3
[»] chr8 (3 HSPs)
chr8 (147-515)||(43592860-43593232)
chr8 (519-623)||(43593440-43593544)
chr8 (20-132)||(43592758-43592874)
[»] chr5 (4 HSPs)
chr5 (362-627)||(43446590-43446856)
chr5 (147-361)||(43447512-43447726)
chr5 (20-132)||(43447712-43447829)
chr5 (204-265)||(22772891-22772952)
[»] chr3 (4 HSPs)
chr3 (147-359)||(47862843-47863056)
chr3 (363-515)||(47862637-47862789)
chr3 (519-627)||(47861558-47861666)
chr3 (20-132)||(47863042-47863161)
[»] chr7 (5 HSPs)
chr7 (203-376)||(9181970-9182140)
chr7 (519-627)||(9182305-9182413)
chr7 (525-627)||(46571354-46571456)
chr7 (78-132)||(9181436-9181490)
chr7 (147-202)||(9181476-9181531)
[»] chr4 (2 HSPs)
chr4 (275-469)||(40904106-40904289)
chr4 (225-290)||(40904031-40904095)
[»] scaffold0038 (3 HSPs)
scaffold0038 (147-241)||(114955-115049)
scaffold0038 (20-132)||(115035-115153)
scaffold0038 (261-301)||(114914-114954)
[»] chr6 (6 HSPs)
chr6 (147-241)||(28323640-28323734)
chr6 (20-132)||(28323720-28323838)
chr6 (556-631)||(28364791-28364866)
chr6 (440-515)||(28365291-28365366)
chr6 (301-392)||(28365364-28365452)
chr6 (261-301)||(28323599-28323639)
[»] chr1 (1 HSPs)
chr1 (194-258)||(52336057-52336121)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 147 - 515
Target Start/End: Original strand, 43592860 - 43593232
Alignment:
Q  147 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagcttaatttt 246  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43592860 ctaaatattagatgtattggttttttcctaaccttatggatataccattatatatttgtagatacgttactattcatttatgtatcaagagcttaatttt 43592959  T
Q  247 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43592960 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctatt 43593059  T
Q  347 ttgctttcttacatagtatataagaactttggttgcagtcgtttgattataatgttattacatattacactat----cctcattataagtttaagtatga 442  Q
    | || || |||||||   ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||    
T  43593060 tcgcattgttacatatattataagaactttggtagaagtcgtttgattataatgttattacatatcacactatcctccctcattataagtttaagtatga 43593159  T
Q  443 gatatcctttgaaatataatgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgtt 515  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43593160 gatatcctttaaaatataatgtgcaaaccaacaaacaaataaaatgaattatccttattacttatttatcgtt 43593232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 519 - 623
Target Start/End: Original strand, 43593440 - 43593544
Alignment:
Q  519 aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg 618  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  43593440 aatgatttttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatacatgtatgtattatgtagagttgatctacatagtttg 43593539  T
Q  619 aattt 623  Q
    |||||    
T  43593540 aattt 43593544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 43592758 - 43592874
Alignment:
Q  20 attttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatat------actttgatatgccataatcttttgatgtgttat 113  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||      ||||||||||||||||||||||||||||||| |    
T  43592758 attttgaagcaaagggtttctctccttttactaaacatatggatgaaac--gctatcatattcttatactttgatatgccataatcttttgatgtgttgt 43592855  T
Q  114 gaaactaaatattatatgt 132  Q
    |||||||||||||| ||||    
T  43592856 gaaactaaatattagatgt 43592874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 362 - 627
Target Start/End: Complemental strand, 43446856 - 43446590
Alignment:
Q  362 gtatataagaactttggttgcagtcgtttgattataatgttattacatattacactatcctcattataagttt-aagtatgagatatcctttgaaatata 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43446856 gtatataagaactttggttgcagtcgtttgattataatgttattacatatcacactatcctcattataagttttaagtatgagatatcctttgaaatata 43446757  T
Q  461 atgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgttatcaatgatttttcatttatttgttaggatttattagggttaaat 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43446756 atgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttattaatcgttatcaatgatttttcatttatttgttaggacttattagggttaaat 43446657  T
Q  561 taactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatg 627  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43446656 aaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatg 43446590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 147 - 361
Target Start/End: Complemental strand, 43447726 - 43447512
Alignment:
Q  147 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagcttaatttt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43447726 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttaagtatcaagagcttaatttt 43447627  T
Q  247 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctatt 346  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43447626 gtatgaattacccttatatgtatagaatcaaagaaaagttaattgatatatgaattacttaccaattcacttaattgatattttttcttcatattctatt 43447527  T
Q  347 ttgctttcttacata 361  Q
    |||||||||||||||    
T  43447526 ttgctttcttacata 43447512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 43447829 - 43447712
Alignment:
Q  20 attttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatat------actttgatatgccataatcttttgatgtgttat 113  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  43447829 atttttaagcaaagggtttctctcctttta-taagcatatgggtgaaactagctatcatattcttatactttgatatgccataatcttttgatgtgttat 43447731  T
Q  114 gaaactaaatattatatgt 132  Q
    |||||||||||||||||||    
T  43447730 gaaactaaatattatatgt 43447712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 22772891 - 22772952
Alignment:
Q  204 gtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatat 265  Q
    |||||||| ||||||||||||| |||||  ||||||| ||||||||||||||||| ||||||    
T  22772891 gtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatat 22772952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 147 - 359
Target Start/End: Complemental strand, 47863056 - 47862843
Alignment:
Q  147 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagcttaatttt 246  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47863056 ctaaatattagatgtattggttttttcctaaccttatgggtataccattatatatttgtggatccgttactattcatttatgtatcaagagcttaatttt 47862957  T
Q  247 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatatt-ttttcttcatattctat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  47862956 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttttttcatattctat 47862857  T
Q  346 tttgctttcttaca 359  Q
    ||||| || |||||    
T  47862856 tttgcattgttaca 47862843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 363 - 515
Target Start/End: Complemental strand, 47862789 - 47862637
Alignment:
Q  363 tatataagaactttggttgcagtcgtttgattataatgttattacatattacactatcctcattataagtttaagtatgagatatcctttgaaatataat 462  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47862789 tatataagaactttggttacagtcgtttgattataatgttattacatatcacactatcctcattataagtttaagtatgagatatcctttaaaatataat 47862690  T
Q  463 gtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgtt 515  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  47862689 gtgcaaaccaacaaacaaataaaatgaattatccttattacttatttatcgtt 47862637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 519 - 627
Target Start/End: Complemental strand, 47861666 - 47861558
Alignment:
Q  519 aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg 618  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||    
T  47861666 aatgatttttcatttatttgttaggacttattagggttaaattaactaggttgctacgttacgcatgtatgtattatgtaaagttgatctacattgtttg 47861567  T
Q  619 aatttgatg 627  Q
    |||||||||    
T  47861566 aatttgatg 47861558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 47863161 - 47863042
Alignment:
Q  20 attttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatca------tatactttgatatgccataatcttttgatgtgtt-a 112  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||      |||||||| ||||||||||||||||||||||||| |    
T  47863161 attttgaagcaaagggcttctctccttttactaagcatagggatgaaactagctatcatgttcttatactttaatatgccataatcttttgatgtgttaa 47863062  T
Q  113 tgaaactaaatattatatgt 132  Q
    ||||||||||||||| ||||    
T  47863061 tgaaactaaatattagatgt 47863042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 5e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 9181970 - 9182140
Alignment:
Q  203 tgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9181970 tgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaatt 9182069  T
Q  303 acttaccaattcacttaattgatattttttcttcatattctattttgctttcttacatagtatataagaacttt 376  Q
    | ||||||||||||||| ||||||||||||||||||||||||||| || || |||||   ||||||||||||||    
T  9182070 agttaccaattcacttagttgatattttttcttcatattctatttcgcattgttaca---tatataagaacttt 9182140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 519 - 627
Target Start/End: Original strand, 9182305 - 9182413
Alignment:
Q  519 aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg 618  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  9182305 aatgatttttcatttatttgttaggacttattaggattaaattaactaggttgctatgttatgaatgtatgtattatgtagagtttatctacattgtttg 9182404  T
Q  619 aatttgatg 627  Q
    |||||||||    
T  9182405 aatttgatg 9182413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 525 - 627
Target Start/End: Original strand, 46571354 - 46571456
Alignment:
Q  525 ttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttg 624  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  46571354 ttttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatgcatgtatgtattacgtagagttgttctacattgtttgaatttg 46571453  T
Q  625 atg 627  Q
    |||    
T  46571454 atg 46571456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 9181436 - 9181490
Alignment:
Q  78 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9181436 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattagatgt 9181490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 9181476 - 9181531
Alignment:
Q  147 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatt 202  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  9181476 ctaaatattagatgtattggttttttcctatccttatgtgtataccattatatatt 9181531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 275 - 469
Target Start/End: Original strand, 40904106 - 40904289
Alignment:
Q  275 caaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctattttgctttcttacatagtatataagaact 374  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |           |||||||||||    
T  40904106 caaagaaaagttaattgatataagaattacttatcaattcacttaattgatattttttcttcatcttctattttgcat-----------atataagaact 40904194  T
Q  375 ttggttgcagtcgtttgattataatgttattacatattacactatcctcattataagtttaagtatgagatatcctttgaaatataatgtgcaaa 469  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40904195 ttggttgcagtcgtttgattataatgttattacatatcacgctatcctcattataagtttaagtatgagatatcctttgaaatataatgtgcaaa 40904289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 40904031 - 40904095
Alignment:
Q  225 tatgtatcaagagcttaattttgtatgaattatccttatatgtatagaatcaaagaaaagttaatt 290  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40904031 tatgtatcaagagcttaattttgtatgaattat-cttatatgtatagaatcaaagaaaagttaatt 40904095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 115049 - 114955
Alignment:
Q  147 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 241  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115049 ctaaatattagatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 115153 - 115035
Alignment:
Q  20 attttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatat------actttgatatgccataatcttttgatgtgttat 113  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||||||||      |||||||||||||||||||||||||||||||||    
T  115153 attttgaagcaaagggtttctctccttttaccaagcattggggtgaaattagctatcatattcttatactttgatatgccataatcttttgatgtgttat 115054  T
Q  114 gaaactaaatattatatgt 132  Q
    |||||||||||||| ||||    
T  115053 gaaactaaatattagatgt 115035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 114954 - 114914
Alignment:
Q  261 tatatgtatagaatcaaagaaaagttaattgatataagaat 301  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  114954 tatatgtatagaatcaaagaaaagttaattgatataagaat 114914  T

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Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 28323734 - 28323640
Alignment:
Q  147 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 241  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28323734 ctaaatattagatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 28323640  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 28323838 - 28323720
Alignment:
Q  20 attttgaagcaaagggtttctctccttttactaagcatatgggtgaaactagctatcatat------actttgatatgccataatcttttgatgtgttat 113  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||||||||      |||||||||||||||||||||||||||||||||    
T  28323838 attttgaagcaaagggtttctctccttttaccaagcattggggtgaaattagctatcatattcttatactttgatatgccataatcttttgatgtgttat 28323739  T
Q  114 gaaactaaatattatatgt 132  Q
    |||||||||||||| ||||    
T  28323738 gaaactaaatattagatgt 28323720  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 556 - 631
Target Start/End: Complemental strand, 28364866 - 28364791
Alignment:
Q  556 taaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatgatgt 631  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28364866 taaattaactaggttgctatgttatgcatgtatgtattatgtagagttgatctacattgtttgaatttgatgatgt 28364791  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 440 - 515
Target Start/End: Complemental strand, 28365366 - 28365291
Alignment:
Q  440 tgagatatcctttgaaatataatgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgtt 515  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  28365366 tgagatatcctttaaaatataatgtgaaaaccaacaaacaaataaaatgaattatccttattacttatttatcgtt 28365291  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 28365452 - 28365364
Alignment:
Q  301 ttacttaccaattcacttaattgatattttttcttcatattctattttgctttcttacatagtatataagaactttggttgcagtcgtttga 392  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| || || |||||   ||||||||||||||||||| ||||||||||    
T  28365452 ttacttaccaattcacttaattaatattttttcttcgtattctatttcgcattgttaca---tatataagaactttggttgtagtcgtttga 28365364  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 28323639 - 28323599
Alignment:
Q  261 tatatgtatagaatcaaagaaaagttaattgatataagaat 301  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28323639 tatatgtatagaatcaaagaaaagttaattgatataagaat 28323599  T

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Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 52336057 - 52336121
Alignment:
Q  194 ttatatatttgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52336057 ttatatatttgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaactatc 52336121  T

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