View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_30 (Length: 314)
Name: NF19467_low_30
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 22944185 - 22944478
Alignment:
| Q |
2 |
tataacaagatgtgcaaacagaagatcacaaagaacaattagaatagtctaaaaacactcctaaaaccaataactagatcaccacaacaatcaatgatac |
101 |
Q |
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| T |
22944185 |
tataacaagatgtgcaaacagaagatcacaaagaacaattagaatagtctaaaaacactcctaaagccaataactagatcaccacaacaatcaatgatac |
22944284 |
T |
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| Q |
102 |
taaacataaggcaagagctcctaactctccaaatcaataatgaaacaaaaacactgataattccttcactagaaaaccatataaattcctagatcattcg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22944285 |
taaacataaggcaagagctcctaactctccaaatcaataatgaaacaaaaacactgataattccttcactagaaaaccatataaattcctagatcatttg |
22944384 |
T |
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| Q |
202 |
acagtatttacgtttatgattgatcctcggtgagaaacattgtcaatacaccattaacacgtagtatatataacagtatttactaagagctgaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22944385 |
acagtatttacgtttatgattgatcctcggtgagaaacattgtcaatacaccattaacacgtagtatatataacagtatttactaagagctgaa |
22944478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 22944603 - 22944669
Alignment:
| Q |
183 |
taaattcctagatcattcgacagtatttacgtttatgattgatcctcggtgagaaacattgtcaata |
249 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22944603 |
taaattcctagatcaatcgacagtatttacgtttacgattgatcctcggtgagaaacattgtcaata |
22944669 |
T |
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