View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_32 (Length: 302)
Name: NF19467_low_32
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11575157 - 11574932
Alignment:
| Q |
1 |
tattttctttactagcataaatttttaccaacaactcatagttaaaaataaaaagtaacaatagtagtatgcaaattcaaaaccaagtgagggaaacaaa |
100 |
Q |
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| T |
11575157 |
tattttctttactagcacaaatttttaccaacaactcatagttaaaaataaaaagtaacaatagtagtatgcaaattcaaaaccaagtgagggaaaaaaa |
11575058 |
T |
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| Q |
101 |
tttgatataagaaataatgtacatgactatggacgtaaatgaataaataaaatcataaaattggtacctggtaatgaactctctaagttcactctcatag |
200 |
Q |
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| T |
11575057 |
tttgatataagaaataatgtacatgactatggacgtaaatgaataaataaaatcataaaattagtacctggtaatgaactctctaagttcactctcatag |
11574958 |
T |
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| Q |
201 |
ataggataacctttagaaaatatcat |
226 |
Q |
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| T |
11574957 |
ataggataacctttagaaaatgtcat |
11574932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 11574848 - 11574768
Alignment:
| Q |
218 |
aaatatcatccaaatttaaattggccaatatttccctaacatctggttgaatttgttgtggcaccattccaatattcttgg |
298 |
Q |
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| T |
11574848 |
aaatatcatccaaatttaaattggccaatatttccctaacatctggttgaatttgttgtggcaccattccaatattgttgg |
11574768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 10363543 - 10363691
Alignment:
| Q |
42 |
ttaaaaataaaaagtaacaatagtagtatgcaaattcaaaaccaagtgagggaaacaaatttgatataagaaataatgtacatgactatggacgtaaatg |
141 |
Q |
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| T |
10363543 |
ttaaaaataaaaagtaacatgtgtattatgtaaattcaaaaccaagtgaggaaaacaattttgatagaagaaataatatacatgactgtggacgtaaata |
10363642 |
T |
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| Q |
142 |
aataaataaaatcataaaattggtacctggtaatgaactctctaagttca |
191 |
Q |
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| T |
10363643 |
aataaataaactcataaaa-cggtacctggtaaaaaacactccaagttca |
10363691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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