View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_33 (Length: 299)
Name: NF19467_low_33
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 40776193 - 40776470
Alignment:
| Q |
19 |
cacaacaatataattgtttttcgtgaaaattatatgaattttttgtggacgtaaaatctcgttgagttgaactagcttgtccatttccccttt-gaaatt |
117 |
Q |
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| T |
40776193 |
cacaacaatataattatttttcgttaaaattatatgaattttttgtggacttgaaatctcgttgcgttgaactagcttgtccatttccccttttgaaatt |
40776292 |
T |
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| Q |
118 |
tgatgaggaatgagtggcaacctaacacacatggaaaaagctatgcactttctctatctctagcaacaaacagaaaaatctagtccatgaaacttcctca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40776293 |
tgatgaggaatgagtggcaacctaacacacatggaaaaagctatgcactttctctatctctagcaacaaacagaaaaatctagtccatgaaacttcctca |
40776392 |
T |
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| Q |
218 |
tgaaatgaatggtcaccaaaatatcagtctctagggatgggtccttactgaccccacaaatatagttctctgctcctc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
40776393 |
tgaaatgaatggtcaccaaaatatcagtctctagggatgggtccttactgaccccacaaatatagttcactgatcctc |
40776470 |
T |
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