View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_35 (Length: 290)
Name: NF19467_low_35
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33327037 - 33326759
Alignment:
| Q |
1 |
tcagatgcttatatcctatgttttttaccgcaggacatgtttttgcttttggagaatctagagatttagcaatttcaaatatggtactagggttgaagga |
100 |
Q |
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| T |
33327037 |
tcagatgcttatatcctatgttttttaccgcaggacatgtttttgcttttggagaatctagagctttagcaatttcaaatatggtactagggttgaagga |
33326938 |
T |
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| Q |
101 |
aattcaaattcgaggagaaatccgtaccaatgttgattacacaattgatcttctgaatgtaaataactaccacgatgacaaattagttttatggcatgtt |
200 |
Q |
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| T |
33326937 |
aattcaaattcgaggagaaatccgtaccaatgttgattacacaattgatcttctgaatgtaaataactaccacgatgacaaattagttttatggcatgtt |
33326838 |
T |
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| Q |
201 |
tttataatgtagaagtgacattattaccatatttgatctcaggcttcagactacagagacaacaaaattcacacaggtt |
279 |
Q |
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| T |
33326837 |
tttataatgtagaagtgacattattaccatatttgatctcaggcttcagactacagagacaacaaaattcacacaggtt |
33326759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 33351725 - 33351450
Alignment:
| Q |
1 |
tcagatgcttatatcctatgttttttaccgcaggacatgtttttgcttttggagaatctagagatttagcaatttcaaatatggtactagggttgaagga |
100 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||| |
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| T |
33351725 |
tcagatgcttatatcctatgttttt-acctcaggacatgtgttcgcttttggagaatctagagctttagccattgcaaatatggtactggggttgaagga |
33351627 |
T |
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| Q |
101 |
aattcaaattcgaggagaaatccgtaccaatgttgattacacaattgatcttctgaatgtaaataactaccacgatgacaaattagttttatggcatgtt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||| |
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| T |
33351626 |
aattcaaattcgaggagaaattcgtaccaatgttgattacacaattgatcttctgaatgtaaatcactaccatgatgacatattagttttatggcaagtt |
33351527 |
T |
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| Q |
201 |
tttataatgtagaagtgacattattaccatatttgatctcaggcttcagactacagagacaacaaaattcacacagg |
277 |
Q |
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||||| ||| |||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33351526 |
tttattatgcagaagtaacattattacaatactttatctcaggcttcagactacagagacaacaaaattcacacagg |
33351450 |
T |
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