View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19467_low_36 (Length: 289)

Name: NF19467_low_36
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19467_low_36
NF19467_low_36
[»] chr4 (7 HSPs)
chr4 (1-240)||(35042927-35043166)
chr4 (15-97)||(53402559-53402641)
chr4 (8-87)||(13119478-13119557)
chr4 (108-159)||(51325463-51325514)
chr4 (192-237)||(29798840-29798885)
chr4 (192-240)||(54783007-54783056)
chr4 (17-77)||(33085794-33085853)
[»] chr7 (6 HSPs)
chr7 (109-240)||(22720242-22720372)
chr7 (15-78)||(9885657-9885720)
chr7 (26-61)||(31000217-31000252)
chr7 (15-69)||(12163655-12163709)
chr7 (111-152)||(19468252-19468293)
chr7 (192-236)||(18944398-18944442)
[»] chr6 (6 HSPs)
chr6 (109-240)||(26265081-26265217)
chr6 (192-240)||(35189990-35190038)
chr6 (15-92)||(11714241-11714318)
chr6 (15-106)||(30655832-30655923)
chr6 (15-61)||(33189531-33189577)
chr6 (200-240)||(22469299-22469339)
[»] chr2 (10 HSPs)
chr2 (17-93)||(147243-147319)
chr2 (15-106)||(36069367-36069458)
chr2 (17-78)||(17560835-17560896)
chr2 (23-80)||(41969432-41969489)
chr2 (15-93)||(40800192-40800270)
chr2 (15-60)||(33501214-33501259)
chr2 (192-234)||(39879758-39879800)
chr2 (109-146)||(10057146-10057183)
chr2 (15-60)||(41501050-41501095)
chr2 (108-152)||(12759015-12759059)
[»] chr1 (10 HSPs)
chr1 (10-78)||(5696787-5696855)
chr1 (17-107)||(3463600-3463690)
chr1 (17-79)||(30732588-30732650)
chr1 (192-234)||(39740318-39740360)
chr1 (103-152)||(496490-496539)
chr1 (15-76)||(1485446-1485507)
chr1 (16-73)||(6087572-6087629)
chr1 (108-161)||(7380299-7380352)
chr1 (199-240)||(45670793-45670834)
chr1 (17-61)||(32875451-32875495)
[»] chr3 (8 HSPs)
chr3 (15-78)||(35314083-35314146)
chr3 (16-74)||(5528339-5528397)
chr3 (192-240)||(53823940-53823988)
chr3 (196-234)||(3718928-3718966)
chr3 (192-242)||(32741306-32741356)
chr3 (192-226)||(33426775-33426809)
chr3 (108-145)||(13401735-13401772)
chr3 (192-240)||(45079882-45079930)
[»] chr5 (4 HSPs)
chr5 (110-175)||(1411701-1411766)
chr5 (26-93)||(34443367-34443434)
chr5 (199-240)||(1411643-1411684)
chr5 (192-229)||(15523896-15523933)
[»] chr8 (3 HSPs)
chr8 (17-78)||(23129393-23129454)
chr8 (192-242)||(11862747-11862797)
chr8 (192-240)||(13011557-13011606)
[»] scaffold0606 (1 HSPs)
scaffold0606 (15-61)||(1968-2014)
[»] scaffold0012 (1 HSPs)
scaffold0012 (17-93)||(243950-244026)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35043166 - 35042927
Alignment:
Q  1 gtgtaaatatgttcggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatgcggcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |    
T  35043166 gtgtaaatatgttcggaaatgaatcgtacattgagggtgacgcggagtcaccattatatagaggaaggaggcgctaactacttccgtgtaatgcggcgcc 35043067  T
Q  101 tcatcagcagggccgtccctgtaaaatcggagactcgactctcttagtaaaattaggccccattatttagaagag-nnnnnnnnctataatgtttatttt 199  Q
    ||||||||||||   | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  35043066 tcatcagcaggg-tattcctgtgaaatcggagactcgactctcttagtaaaattaggccccattatttagaagagaaaaaaaaactataatgtttatttt 35042968  T
Q  200 attttattagagaataattataatgtttgtggttagaactt 240  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  35042967 attttattagagaataattataatgtttctggttagaactt 35042927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 53402559 - 53402641
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatgcggc 97  Q
    ||||||||||||||| |||||||||||||  | ||||||||||||||  ||| |||||||||||  |||||||| ||||||||    
T  53402559 ggaaatgaatcgtaccttgagggtgacgcgaaatcacccttatataggagaatgaggcgctaacgtcttccgtgaaatgcggc 53402641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 13119478 - 13119557
Alignment:
Q  8 tatgttcggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgt 87  Q
    ||||| || ||||||||||||| ||||| ||||||  |||||||||||||||||  |||||||||| ||||  |||||||    
T  13119478 tatgtgcgtaaatgaatcgtaccttgagagtgacgttgagtcacccttatataggtgaaggaggcgttaacggcttccgt 13119557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 51325514 - 51325463
Alignment:
Q  108 cagggccgtccctgtaaaatcggagactcgactctcttagtaaaattaggcc 159  Q
    ||||||||||||||| |||  |||| | ||||||||||||||||||||||||    
T  51325514 cagggccgtccctgtgaaactggaggcccgactctcttagtaaaattaggcc 51325463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 29798840 - 29798885
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttagaa 237  Q
    ||||||||||||| ||| | |||||||||||||||||| |||||||    
T  29798840 tttattttatttttttaaaaaataattataatgtttgttgttagaa 29798885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 54783056 - 54783007
Alignment:
Q  192 tttatttta-ttttattagagaataattataatgtttgtggttagaactt 240  Q
    ||||||||| |||| ||| |||||||||||||||||||| ||||||||||    
T  54783056 tttattttaatttttttaaagaataattataatgtttgttgttagaactt 54783007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33085853 - 33085794
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaa 77  Q
    |||||||| |||| |||||||||||||  ||||||||||| |||||||| ||||| |||||    
T  33085853 aaatgaatggtac-ttgagggtgacgcgaagtcacccttacatagaggacggaggtgctaa 33085794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 22720372 - 22720242
Alignment:
Q  109 agggccgtccctgtaaaatcggagactcgactctcttagtaaaattaggccccattatttagaagag-nnnnnnnnctataatgtttattttattttatt 207  Q
    |||| ||||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||         ||||||||||  |||||| || ||    
T  22720372 agggtcgtccctgtgaaatcggagagccggctctcttagtaaaattaggccccattatttagaagagaaaaaaaaactataatgtt--ttttatcttttt 22720275  T
Q  208 agagaataattataatgtttgtggttagaactt 240  Q
    |||||||||||||||||||||||||||||||||    
T  22720274 agagaataattataatgtttgtggttagaactt 22720242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 9885720 - 9885657
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaac 78  Q
    ||||||||||| ||  | ||||||||| | ||| ||||||||||||||| ||||||||||||||    
T  9885720 ggaaatgaatcatatctcgagggtgacactgagacacccttatatagagaaaggaggcgctaac 9885657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 31000217 - 31000252
Alignment:
Q  26 gtacattgagggtgacgcagagtcacccttatatag 61  Q
    |||||||||||||||||| |||||||||||||||||    
T  31000217 gtacattgagggtgacgctgagtcacccttatatag 31000252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 12163709 - 12163655
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaagga 69  Q
    ||||||||||||||  ||||||||||||| || || |||||||| ||||||||||    
T  12163709 ggaaatgaatcgtaacttgagggtgacgcggaatcgcccttatagagaggaagga 12163655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 19468252 - 19468293
Alignment:
Q  111 ggccgtccctgtaaaatcggagactcgactctcttagtaaaa 152  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
T  19468252 ggccgtccctataaaatcggaggctcgactctcatagtaaaa 19468293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 18944442 - 18944398
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttaga 236  Q
    ||||||||| ||| |||||||||||||||||| ||||| ||||||    
T  18944442 tttattttacttttttagagaataattataatttttgttgttaga 18944398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 26265081 - 26265217
Alignment:
Q  109 agggccgtccctgtaaaatcggagactcgactctcttagtaaaattaggccccattatttagaagag-nnnnnnnnctataatg----tttattttattt 203  Q
    |||||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||          |||||||    ||||||||||||    
T  26265081 agggccgtccctatgaaatcggagacccggctctcttagtaaaattaggccccattatttagaagagaaaaaaaaattataatgtttttttattttattt 26265180  T
Q  204 tattagagaataattataatgtttgtggttagaactt 240  Q
    | |||||||||||||||||||||||||| ||||||||    
T  26265181 ttttagagaataattataatgtttgtgggtagaactt 26265217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 35190038 - 35189990
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttagaactt 240  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  35190038 tttattttatttttttaaagaataattataatgtttgttgttagaactt 35189990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 11714241 - 11714318
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaat 92  Q
    |||||||||| |||| ||||||||||||  |||||||||||||||||  |||| ||||||| || |||| | ||||||    
T  11714241 ggaaatgaattgtaccttgagggtgacgtggagtcacccttatataggagaagaaggcgctgacgactttcatgtaat 11714318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 30655832 - 30655923
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatgcggcagctcatca 106  Q
    |||||||||| |||| |||||||||| || || ||||||||||||| | |||||||  |||||  | ||||||| ||||||||  |||||||    
T  30655832 ggaaatgaattgtaccttgagggtgatgcggaatcacccttatatacaagaaggagatgctaaagaattccgtgaaatgcggcgcctcatca 30655923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 33189531 - 33189577
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatag 61  Q
    ||||||||||||||| |||| |||||||| ||||| |||||||||||    
T  33189531 ggaaatgaatcgtaccttgatggtgacgctgagtctcccttatatag 33189577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 22469299 - 22469339
Alignment:
Q  200 attttattagagaataattataatgtttgtggttagaactt 240  Q
    ||||| ||||||||||||||||||||| || ||||||||||    
T  22469299 atttttttagagaataattataatgttagttgttagaactt 22469339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 147243 - 147319
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatg 93  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||| ||||    
T  147243 aaatgaaacgtaccttgagggtgacgcaaggtcacccttatatagaggaaggaggcgctaaccactttcgtgaaatg 147319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 36069367 - 36069458
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatgcggcagctcatca 106  Q
    |||||||||| |||| ||||||||||||||||||| || ||  | |||||||||||||||||||| |||||||| ||||||||  |||||||    
T  36069367 ggaaatgaattgtaccttgagggtgacgcagagtcgcctttcgaaagaggaaggaggcgctaactgcttccgtgaaatgcggcgcctcatca 36069458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 17560835 - 17560896
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaac 78  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||  |||||||||||||||    
T  17560835 aaatgaattgtaccttgagggtgacgcagaatcacccttatataggagaaggaggcgctaac 17560896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 41969432 - 41969489
Alignment:
Q  23 atcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaacta 80  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  41969432 atcgtaccttgagggtgacgcgaagtcacccttatatagaggaaggaggtgctaacta 41969489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 40800192 - 40800270
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatg 93  Q
    ||||||||||||||| |||||||||||||  | ||||||||||||||  |||||||  |||||| ||||||||| ||||    
T  40800192 ggaaatgaatcgtaccttgagggtgacgcgaaatcacccttatataggagaaggagatgctaacgacttccgtgaaatg 40800270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 33501259 - 33501214
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatata 60  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||    
T  33501259 ggaaattaatcgtatattgagggtgacgcggagtcacccttatata 33501214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 39879758 - 39879800
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggtta 234  Q
    |||||||||||||  ||||||||||||||||||||||| ||||    
T  39879758 tttattttattttcgtagagaataattataatgtttgttgtta 39879800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 10057183 - 10057146
Alignment:
Q  109 agggccgtccctgtaaaatcggagactcgactctctta 146  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  10057183 agggccgtccctgtaaaatctgagactcggctctctta 10057146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 41501095 - 41501050
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatata 60  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  41501095 ggaaatgaatcgtaccttgagggtgacgcggagacactcttatata 41501050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 12759059 - 12759015
Alignment:
Q  108 cagggccgtccctgtaaaatcggagactcgactctcttagtaaaa 152  Q
    |||||||||||||||||||| |||| | | |||||||||||||||    
T  12759059 cagggccgtccctgtaaaattggaggcccaactctcttagtaaaa 12759015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 5696855 - 5696787
Alignment:
Q  10 tgttcggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaac 78  Q
    |||| ||||||||||||||| |||||||||||||||| || ||||||||||| || |||||||||||||    
T  5696855 tgttgggaaatgaatcgtaccttgagggtgacgcagaatcgcccttatatagggggaggaggcgctaac 5696787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3463690 - 3463600
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatgcggcagctcatcag 107  Q
    ||||||||||||  |||||||||||   |||||||||||||||||  |||||||||||||||  |||||||  |||| |||| ||||||||    
T  3463690 aaatgaatcgtattttgagggtgacaatgagtcacccttatataggcgaaggaggcgctaacggcttccgtaaaatgtggcacctcatcag 3463600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 30732588 - 30732650
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaact 79  Q
    ||||| || |||| || ||||||| ||||||||||||||||||||| | |||||| |||||||    
T  30732588 aaatgcattgtaccttaagggtgatgcagagtcacccttatatagaaggaggaggagctaact 30732650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 39740318 - 39740360
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggtta 234  Q
    ||||||||||||| | |||||||||||||||||||||| ||||    
T  39740318 tttattttattttttaagagaataattataatgtttgttgtta 39740360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 496490 - 496539
Alignment:
Q  103 atcagcagggccgtccctgtaaaatcggagactcgactctcttagtaaaa 152  Q
    ||||||||||||||||||||||||| ||||    ||||||||||||||||    
T  496490 atcagcagggccgtccctgtaaaattggaggtctgactctcttagtaaaa 496539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 1485446 - 1485507
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgcta 76  Q
    ||||||||||| ||| ||||||||||||| || ||| ||||||||| |||||| ||| ||||    
T  1485446 ggaaatgaatcataccttgagggtgacgcggaatcatccttatataaaggaagaaggtgcta 1485507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 6087629 - 6087572
Alignment:
Q  16 gaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcg 73  Q
    |||||||||||||  ||||||||| ||||||| |||| ||||||||  ||||||||||    
T  6087629 gaaatgaatcgtatcttgagggtgccgcagagccacctttatataggagaaggaggcg 6087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 7380299 - 7380352
Alignment:
Q  108 cagggccgtccctgtaaaatcggagactcgactctcttagtaaaattaggcccc 161  Q
    ||||||||||||| |||||| |||| |||| ||||| |||||||| ||||||||    
T  7380299 cagggccgtccctataaaattggaggctcgtctctcgtagtaaaaataggcccc 7380352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 45670834 - 45670793
Alignment:
Q  199 tattttattagagaataattataatgtttgtggttagaactt 240  Q
    |||||| |||||||||||||||||||| ||| ||||||||||    
T  45670834 tatttttttagagaataattataatgtgtgttgttagaactt 45670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 32875495 - 32875451
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatag 61  Q
    |||||||| |||| ||||||||||||  |||||||||||||||||    
T  32875495 aaatgaattgtaccttgagggtgacgttgagtcacccttatatag 32875451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 35314146 - 35314083
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaac 78  Q
    ||||||||||||||| |||||||||||||  |||| |||||||||||||||| |||||||||||    
T  35314146 ggaaatgaatcgtaccttgagggtgacgctaagtctcccttatatagaggaatgaggcgctaac 35314083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 5528397 - 5528339
Alignment:
Q  16 gaaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgc 74  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||  |||||||||||    
T  5528397 gaaataaatcgtaccttgagggtgacgcagaatcacccttatataggagaaggaggcgc 5528339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 53823940 - 53823988
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttagaactt 240  Q
    ||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  53823940 tttattttattttcttagagaataattataatgtttgttgttaaaactt 53823988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 3718966 - 3718928
Alignment:
Q  196 ttttattttattagagaataattataatgtttgtggtta 234  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  3718966 ttttatttttttagagaataattataatgtttgttgtta 3718928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 32741356 - 32741306
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttagaacttat 242  Q
    |||||||||| || ||| |||||||||||||||||||| |||||| |||||    
T  32741356 tttattttatatttttaaagaataattataatgtttgttgttagagcttat 32741306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 33426809 - 33426775
Alignment:
Q  192 tttattttattttattagagaataattataatgtt 226  Q
    ||||||||||||| |||||||||||||||||||||    
T  33426809 tttattttattttcttagagaataattataatgtt 33426775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 13401772 - 13401735
Alignment:
Q  108 cagggccgtccctgtaaaatcggagactcgactctctt 145  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  13401772 cagggccgtccctgtaaaataggaggctcgactctctt 13401735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 45079930 - 45079882
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttagaactt 240  Q
    ||||||||||||| |||||||||| ||||||| ||| | ||||||||||    
T  45079930 tttattttattttcttagagaatatttataatatttattgttagaactt 45079882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 1411766 - 1411701
Alignment:
Q  110 gggccgtccctgtaaaatcggagactcgactctcttagtaaaattaggccccattatttagaagag 175  Q
    |||| |||||||| |||||| |||| |  |||||||||||||||||||||||||||||||||||||    
T  1411766 gggctgtccctgtgaaatcgaagaccccgctctcttagtaaaattaggccccattatttagaagag 1411701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 34443367 - 34443434
Alignment:
Q  26 gtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatg 93  Q
    |||| ||||||||||||||||||| |||||||| |||| |||||||| |||||| |||||||| ||||    
T  34443367 gtaccttgagggtgacgcagagtcgcccttatacagagaaaggaggctctaactgcttccgtgaaatg 34443434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 1411684 - 1411643
Alignment:
Q  199 tattttattagagaataattataatgtttgtggttagaactt 240  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  1411684 tatttttttagaaaataattataatgtttgtggttagaactt 1411643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 15523933 - 15523896
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgt 229  Q
    |||||||||| || ||||||||||||||||||||||||    
T  15523933 tttattttatatttttagagaataattataatgtttgt 15523896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 23129393 - 23129454
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaac 78  Q
    ||||||||||||| || ||||||||||  ||||||||||||||||| |||||||||| ||||    
T  23129393 aaatgaatcgtactttcagggtgacgccaagtcacccttatatagacgaaggaggcgataac 23129454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 11862747 - 11862797
Alignment:
Q  192 tttattttattttattagagaataattataatgtttgtggttagaacttat 242  Q
    ||||||||||||| | |||||||||||||||||||||| |||||| |||||    
T  11862747 tttattttattttttgagagaataattataatgtttgttgttagagcttat 11862797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 13011557 - 13011606
Alignment:
Q  192 tttatttta-ttttattagagaataattataatgtttgtggttagaactt 240  Q
    ||||||||| |||| ||| |||||||||||||||||||| ||||||||||    
T  13011557 tttattttaatttttttaaagaataattataatgtttgttgttagaactt 13011606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 2014 - 1968
Alignment:
Q  15 ggaaatgaatcgtacattgagggtgacgcagagtcacccttatatag 61  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  2014 ggaaatgaatcgtaccttgagggtgatgcagaatcacccttatatag 1968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 243950 - 244026
Alignment:
Q  17 aaatgaatcgtacattgagggtgacgcagagtcacccttatatagaggaaggaggcgctaactacttccgtgtaatg 93  Q
    ||||||||||||| |||| ||||| |  || |||||| || ||||||||||||| |||||||| |||| ||| ||||    
T  243950 aaatgaatcgtaccttgaaggtgatgtggactcacccgtaaatagaggaaggagacgctaactgcttctgtgaaatg 244026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University