View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_38 (Length: 283)
Name: NF19467_low_38
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30172188 - 30172407
Alignment:
| Q |
1 |
tcttgaacagccataggttcttctatctcaagaccatccatgttttcatcaacattagcaacacctgatgaatttgatgaagatgccttttcctgtgcag |
100 |
Q |
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| T |
30172188 |
tcttgaacagccacaggttcttctatatcaagagcatccatgttttcatcagcattagcaacacctgatgaatttgaggaagatgcctcttcctgtgcag |
30172287 |
T |
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| Q |
101 |
ttgtagtttccgagacagtaggctgattttgaatagcaaaacggcccagtaaccgaatgtcgttcttctttattagagactttaatagttctaacctttt |
200 |
Q |
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||| ||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
30172288 |
ttggagtttttgagacaatagattgattttgaatagcagaacggcccagtaaccgaatgtcgttctcctttcttagagactttaatagttctaacatttt |
30172387 |
T |
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| Q |
201 |
cactgctgatttatccaaat |
220 |
Q |
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| T |
30172388 |
cactgctgattcatccaaat |
30172407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 30144338 - 30144470
Alignment:
| Q |
1 |
tcttgaacagccataggttcttctatctcaagaccatccatgttttcatcaacattagcaacacctgatgaatttgatgaagatgccttttcctgtgcag |
100 |
Q |
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| T |
30144338 |
tcttgaacagccacaggttcttctatctcaagagcatccatgttttcatcagcattagcaacacctgatgaatttgatgaagatgccttttcctgtgcag |
30144437 |
T |
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| Q |
101 |
ttgtagtttccgagacagtaggctgattttgaa |
133 |
Q |
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| T |
30144438 |
ttggaggttccgagacaataggttgattttgaa |
30144470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 30187727 - 30187892
Alignment:
| Q |
1 |
tcttgaacagccataggttcttctatctcaagaccatccatgttttcatcaacattagcaacacctgatgaatttgatgaagatgccttttcctgtgcag |
100 |
Q |
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| T |
30187727 |
tcttgaacagccacaggttcttctatatcaagagcatccatgttttcatcagcattagtaacacctgatgaatttgatgaagatgcctcttcctgtgaag |
30187826 |
T |
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| Q |
101 |
ttgtagtttccgagacagtaggctgattttgaatagcaaaacggcccagtaaccgaatgtcgttct |
166 |
Q |
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| T |
30187827 |
ttggagtttccgagacaataggttgattttgaagatcagaacttcccggtaaccaaatgtcgttct |
30187892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 30176208 - 30176304
Alignment:
| Q |
124 |
tgattttgaatagcaaaacggcccagtaaccgaatgtcgttcttctttattagagactttaatagttctaaccttttcactgctgatttatccaaat |
220 |
Q |
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| T |
30176208 |
tgattttgaatagcagaacggcccagtaaccgaatgtcgttctcctttcttagagactttaatagttctaacattttcactgctgattcatccaaat |
30176304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30170408 - 30170478
Alignment:
| Q |
1 |
tcttgaacagccataggttcttctatctcaagaccatccatgttttcatcaacattagcaacacctgatga |
71 |
Q |
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| T |
30170408 |
tcttgaacagccacaggttcttctatatcaagagcatccatgttttcatcagcattagcaacacctgatga |
30170478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 30166456 - 30166541
Alignment:
| Q |
48 |
atcaacattagcaacacctgatgaatttgatgaagatgccttttcctgtgcagttgtagtttccgagacagtaggctgattttgaa |
133 |
Q |
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| T |
30166456 |
atcagcattagcaacacttgatgaatttgatgaagatgcctctttctgtgcagttggagtttccgagacaataggttgcttttgaa |
30166541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 30169781 - 30169864
Alignment:
| Q |
197 |
ttttcactgctgatttatccaaatgacgattgtccgtatctaacaacaaccgaaaataacacataattcaaataaaacccaaataat |
283 |
Q |
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| T |
30169781 |
ttttcaccgctgactcatccaaattaccattgtccataactaacaacaa---aaaataacacataattcaaatataacccaaataat |
30169864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 30188018 - 30188075
Alignment:
| Q |
226 |
ttgtccgtatctaacaacaaccgaaaataacacataattcaaataaaacccaaataat |
283 |
Q |
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| T |
30188018 |
ttgtctgtaactaacagcaacaaaaaataacacataattcaaataaaacccaaataat |
30188075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 30169466 - 30169525
Alignment:
| Q |
74 |
ttgatgaagatgccttttcctgtgcagttgtagtttccgagacagtaggctgattttgaa |
133 |
Q |
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| T |
30169466 |
ttgatgaagatgcctcttcctgtgcagttaaagtttccgagacaataggttgcttttgaa |
30169525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 30169591 - 30169645
Alignment:
| Q |
46 |
tcatcaacattagcaacacctgatgaatttgatgaagatgccttttcctgtgcag |
100 |
Q |
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| T |
30169591 |
tcatcaacattagcaacacttgatgaaattgacgaagatgcctcatcctgtgcag |
30169645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 30144513 - 30144601
Alignment:
| Q |
188 |
gttctaaccttttcactgctgatttatccaaatgacgattgtccgtatctaacaacaaccgaaaataacacataattcaaataaaacccaaa |
279 |
Q |
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| T |
30144513 |
gttcaaaccttttcaccgccgactcatccaaattaccattgtccgtaactaacaacaa---aaaataacacgtaattcaaattaaatccaaa |
30144601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 30166633 - 30166718
Alignment:
| Q |
195 |
ccttttcactgctgatttatccaaatgacgattgtccgtatctaacaacaaccgaaaataacacataattcaaataaaacccaaataat |
283 |
Q |
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|||||||||| |||||| |||||| | || ||||||| | |||||||||| |||| ||||| ||||||||||| |||||||||||| |
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| T |
30166633 |
ccttttcacttctgattcatccaatttaccgttgtccgcaactaacaacaa---aaaacaacacgtaattcaaatataacccaaataat |
30166718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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