View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_4 (Length: 562)
Name: NF19467_low_4
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_4 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 546
Target Start/End: Original strand, 46221037 - 46221572
Alignment:
| Q |
10 |
catcatcaactaacaaacaaacacacgctattaattataaaattttcaattcttataagcaaaaacacgaagtaaatctaaaaatacacgtgcgatcgat |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46221037 |
catcatcaactaacaaacaaacacactctattaattctaaa-ttttcaattcttataagcaaaaacacgaagtaaatctaaaaatacacgtgcgatcgat |
46221135 |
T |
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| Q |
110 |
cacagatcacgtgcatatcaatctagtaatttcatcaactccctagcaaacctagaatttagcgattgaattcaaccgcgcgtgagatatccaggcaaag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46221136 |
cacagatcacgtgcatatcaatctagtaatttcatcaactccctaacaaacctagaatttagcgattgaattcaaccgcgcgtgagatatccaggcaaag |
46221235 |
T |
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| Q |
210 |
gactagcgcgtggagacctgatcggaacttcacgcgtctgtttcccgttaatatcgtagtaaatcacaccggagaaatccaacggctcacactttcctcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46221236 |
gactagcgcgtggagacctgatcggaacttcacgcgtctgtttcccgttaatatcgtagtaaatcacaccggagaaatccaacggctcacactttcctcc |
46221335 |
T |
|
| Q |
310 |
catcaaaatctccttctgccaaacgccgccgtttccccaaccttcctnnnnnnnnnnnnnnnnnngcttcttcttcccgaattgcgacagtgctttgttg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46221336 |
catcaaaatctccttctgccaaacgccgccgtttccccaaccttccttctctctctcctctctctgcttcttcttcccgaattgcgacagtgctttgttg |
46221435 |
T |
|
| Q |
410 |
cttatattgctcagcaacttcttcggtttcgccatcggtgatttcggcggtgtcttaagatcgaacctccactcctcgtctctgatcggtttcgtcgtcg |
509 |
Q |
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| T |
46221436 |
cttatattgctcagcaacttcttcggtttcgccatcggtgatttcggcggtgtcttaagatcgaacctccactcctcgtctctgatcggtttcgtcgtcg |
46221535 |
T |
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| Q |
510 |
atgatgattttgctttttcttttaatcggttagcttt |
546 |
Q |
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| T |
46221536 |
atgatgattttgctttttcttttaatcggttagcttt |
46221572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 206 - 343
Target Start/End: Complemental strand, 29831134 - 29830997
Alignment:
| Q |
206 |
aaaggactagcgcgtggagacctgatcggaacttcacgcgtctgtttcccgttaatatcgtagtaaatcacaccggagaaatccaacggctcacactttc |
305 |
Q |
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|||||| |||||||||||||||||| |||||||||| || ||| | ||||||||||| || | ||| || || |||||||||||||||||||| |||| |
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| T |
29831134 |
aaaggaatagcgcgtggagacctgagaggaacttcaccggtttgtcttccgttaatatcataatgaataacgcctgagaaatccaacggctcacattttc |
29831035 |
T |
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| Q |
306 |
ctcccatcaaaatctccttctgccaaacgccgccgttt |
343 |
Q |
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| T |
29831034 |
ctcccatcaatatctccttctgccaaacaccgtcgttt |
29830997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 29830967 - 29830901
Alignment:
| Q |
376 |
cttcttcttcccgaattgcgacagtgctttgttgcttatattgctcagcaacttcttcggtttcgcc |
442 |
Q |
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|||| ||||||||||||| |||| ||||||||||| || ||||||||||| ||||||| ||||||| |
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| T |
29830967 |
cttcatcttcccgaattgtgacaaagctttgttgctcatgttgctcagcaatttcttcgttttcgcc |
29830901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 10435 - 10521
Alignment:
| Q |
247 |
ctgtttcccgttaatatcgtagtaaatcacaccggagaaatccaacggctcacactttcctcccatcaaaatctccttctgccaaac |
333 |
Q |
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| T |
10435 |
ctgtttccccttattgtcataataaatcacaccagagaaatccaacggttcacacttatcacccatcaagatcgttttctgccaaac |
10521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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