View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_43 (Length: 268)
Name: NF19467_low_43
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 33327018 - 33327114
Alignment:
| Q |
33 |
cataggatataagcatctgatagaagataagccataatattgggaactgtgtaaatacatgtatgcaagaaaaagaaagaaagcatgagttgcagtt |
129 |
Q |
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| T |
33327018 |
cataggatataagcatctgatagaagataagccataatattgggaactgtgtaaatacatgtatgcaagaaaaagaaagaaagcatgagttgcagtt |
33327114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 33351744 - 33351849
Alignment:
| Q |
140 |
atttgaagatcactaataacagttactacttaccaaattgagaatctgagaattcatgaattcctcctccggactgcaaacatataattgccaaaattta |
239 |
Q |
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| T |
33351744 |
atttgaagattactaataacaattactacttaccaaattgagaatctgagaattcatgaattcctcctccggactgcaaacataaaattgccaaaattta |
33351843 |
T |
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| Q |
240 |
gcacct |
245 |
Q |
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|||||| |
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| T |
33351844 |
gcacct |
33351849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 33327110 - 33327200
Alignment:
| Q |
159 |
cagttactacttaccaaattgagaatctgagaattcatgaattcctcctccggactgcaaacatataattgccaaaatttagcacctagac |
249 |
Q |
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| T |
33327110 |
cagttactacttaccaaattgagaatctgagaattcatgaattcctcctccggactgcaaacatataattgccaaaatttagcacctagac |
33327200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 33351706 - 33351746
Alignment:
| Q |
33 |
cataggatataagcatctgatagaagataagccataatatt |
73 |
Q |
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| T |
33351706 |
cataggatataagcatctgatagaagataagccataatatt |
33351746 |
T |
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