View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_45 (Length: 261)
Name: NF19467_low_45
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18804008 - 18803765
Alignment:
| Q |
1 |
ttttgtattgcttgattgaaaaatttcgccacaatacttacacaatataggggctgtggaagccaccatactcgtcaagtaaggtctggggaaaatccga |
100 |
Q |
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| T |
18804008 |
ttttgtattgcttgattgaaaaatttcgccgcaatacttacacaatataggggctgtggaagccaccatactcatcaagtaaggtctggggaaaatccga |
18803909 |
T |
|
| Q |
101 |
atgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattatgaacatcatgaatatgatatactaataaagt |
200 |
Q |
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| T |
18803908 |
atgaaaaagggtcacatatggtactagacctggatcaataactcagtcaatttatattactatgattatgaacatcatgaatattatatactaataaagt |
18803809 |
T |
|
| Q |
201 |
agggatcattatgcattaccattatcaagtagttcattgatcag |
244 |
Q |
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| T |
18803808 |
agggattattatgcattaccattatcaagtagctcattgatcag |
18803765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 4624724 - 4624889
Alignment:
| Q |
79 |
gtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattatgaacatcat |
178 |
Q |
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| T |
4624724 |
gtaaggcctggggaagatcccaatgaaaaagggtcacatatggtatttgacctggatcaataattccatcaatttatattattatgagtatgaacatcat |
4624823 |
T |
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| Q |
179 |
gaatatgatatactaataaagtagggatcattatgcattaccattatcaagtagttcattgatcag |
244 |
Q |
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| T |
4624824 |
gaatatgatatactaataaagtatggaatattatgcattaccattagcaagtagctcatagatcag |
4624889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 25018016 - 25018095
Alignment:
| Q |
165 |
attatgaacatcatgaatatgatatactaataaagtagggatcattatgcattaccattatcaagtagttcattgatcag |
244 |
Q |
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| T |
25018016 |
attatgaacttcatgaatatgatatacttgtgaagcatgtattattatgcattaccattatcaagtagctcattgatcag |
25018095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 25039059 - 25039141
Alignment:
| Q |
87 |
tggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattat |
169 |
Q |
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| T |
25039059 |
tggggaagatcccaatggaaaagggtcacaaatggtaccagacctggatcaataagtccatcaatttatattactatgattat |
25039141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 4600348 - 4600505
Alignment:
| Q |
30 |
cacaatacttacacaatataggggctgtggaagccaccatactcgtcaagtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagac |
129 |
Q |
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|
||||||||||||| |||||| |||||| ||| || | ||||| || ||||| | | ||| | |||| |||||||||| || |||||||||| | ||| |
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| T |
4600348 |
cacaatacttacataatatatgggctgcagaatccttcgtactcctcttgtaagatgttgggcagatcccaatgaaaaagggttacatatggtatttgac |
4600447 |
T |
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| Q |
130 |
ctagatcaataactcagtcaatttatattactatgattatgaacatcatgaatatgat |
187 |
Q |
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| T |
4600448 |
ctggatcaataattccatcaatttatattattatgagcatgaacatcacgaatatgat |
4600505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 25017855 - 25017999
Alignment:
| Q |
36 |
acttacacaatataggggctgtggaagccaccatactcgtcaagtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagat |
135 |
Q |
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||||||| |||||| ||||| |||||||| |||||||| ||| || ||||||| |||| | |||||||| |||||| ||||||| ||||||| || |
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| T |
25017855 |
acttacataatataagggcttaagaagccactgtactcgtcttgtagggcttggggaagatcccagtgaaaaagggtcacaaatggtaccagacctatat |
25017954 |
T |
|
| Q |
136 |
--caataactcagtcaatttatattactatgattatgaacatcat |
178 |
Q |
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|||||| || ||||||||||||||||| |||||||||||||| |
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| T |
25017955 |
accaataattccatcaatttatattactattattatgaacatcat |
25017999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 25039175 - 25039209
Alignment:
| Q |
210 |
tatgcattaccattatcaagtagttcattgatcag |
244 |
Q |
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| T |
25039175 |
tatgcattaccattatcaagtagttcattgatcag |
25039209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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