View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_47 (Length: 257)
Name: NF19467_low_47
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 1516264 - 1516037
Alignment:
| Q |
14 |
atcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagct |
113 |
Q |
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| T |
1516264 |
atcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagct |
1516165 |
T |
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| Q |
114 |
taaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggct |
213 |
Q |
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| T |
1516164 |
taaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggct |
1516065 |
T |
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| Q |
214 |
gcaggatcatcatcatcatggggtagta |
241 |
Q |
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| T |
1516064 |
gcaggatcatcatcatcatggggtagta |
1516037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 1530494 - 1530267
Alignment:
| Q |
14 |
atcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530494 |
atcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagct |
1530395 |
T |
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| Q |
114 |
taaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggct |
213 |
Q |
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| T |
1530394 |
taaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggct |
1530295 |
T |
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| Q |
214 |
gcaggatcatcatcatcatggggtagta |
241 |
Q |
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| T |
1530294 |
gcaggatcatcatcatcatggggtagta |
1530267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 37593038 - 37593131
Alignment:
| Q |
14 |
atcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatcc |
107 |
Q |
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||||||||||||| |||||||||| || | ||||||||||||||| || || ||||| | | |||||||||||||| |||||||| ||||| |
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| T |
37593038 |
atcatcctgatgtgtgtcatgatccttccatgaaagaggaatcaactaaaatatttgttcggttaaatgcagcttatgaaactttgtcgaatcc |
37593131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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