View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_5 (Length: 518)
Name: NF19467_low_5
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 32971901 - 32971423
Alignment:
| Q |
18 |
ggagacaaattcatatgaacagaacaagtagttctggtcacgagtttctgaatttcagatgaaaattcatannnnnnncagcacgct-actctcttctgt |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
32971901 |
ggagacaaattcatatgaacataacaagtagttctggtcatgattttctgaatttcagatgaaaattcatatttttttcagcacgcttactcccttctgt |
32971802 |
T |
|
| Q |
117 |
cattggttccttacatgccaaggaaaataataaagaccttttctattttaccagaatataaggatgaggaaaataataaaccagatgaggaaagaaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32971801 |
cattggttccttacatgccaaggaaaataataaagaccttttctattttaccagaatataaggatgaggaaaataataaaccagatgaggaaagaaaaat |
32971702 |
T |
|
| Q |
217 |
ttccaacatatctaaggtggcatatatcatattatagcatcctcaaatgttgtatataatgtgtatatatctcaaatgtcctatttggtactctatgacc |
316 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32971701 |
tttcaatatatctaaggtggcatatatcatattatagcatcctcaaatgttgtatataatgtgtatatacctcaaatgtcctatttggtactctatgacc |
32971602 |
T |
|
| Q |
317 |
ataataaattgcattacttcttttacaaatatgcagacatgggaataggattctccacatttaannnnnnnggggttaattttgtcattacaacctacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
32971601 |
ataataaattgcattacttcttttacaaatatgtagacatgggaataggattctccatatttaa---ttttggggttaattttgtcattaccacctacaa |
32971505 |
T |
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| Q |
417 |
tattgatccctccaatctc-ttttttagcatgtttgcactaaatacatgatcatcaatcacatgagattgcatagaatcggg |
497 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
32971504 |
tattgatccctccaatctctttttttagcatgtttgcactaaatacatgatcttcaatcacatgagattgcatggaatcggg |
32971423 |
T |
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