View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_50 (Length: 248)
Name: NF19467_low_50
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_50 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 10677918 - 10678016
Alignment:
| Q |
150 |
caatttatctttttgtaaaaaagtgtttgtgtgagtgagagcccaaactttttacatttaggtttgtccctaagtaagcatttgtttcatggtctagtg |
248 |
Q |
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| T |
10677918 |
caatttatctttttgtaaaaaagtgtttgtgtgagtgagagcccaaactttttacatttaggtttgtccctaagtaagcatttgtttcatggtctagtg |
10678016 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 14392344 - 14392311
Alignment:
| Q |
190 |
gcccaaactttttacatttaggtttgtccctaag |
223 |
Q |
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| T |
14392344 |
gcccaaactttttacatttaggtttgtccctaag |
14392311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 39791455 - 39791358
Alignment:
| Q |
124 |
taaataaattagtcgcatcgttaaaccaatttatctttttgtaaaaaagtgtttgtgtgagtgagagcccaaactttttacatttaggtttgtccctaag |
223 |
Q |
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| T |
39791455 |
taaataaattaatcacatcattaaattaatttatctcttaaaaaataagtatttgtgcgagtgtg--cccaaactttttacatttgggcttgtccctaag |
39791358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 42560491 - 42560414
Alignment:
| Q |
144 |
ttaaaccaatttatctttttgtaaaaaagtgtttgtgtgagtgagagcccaaactttttacatttaggtttgtccctaag |
223 |
Q |
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| T |
42560491 |
ttaaaccaatttatcttttaaaaaataagcatttgtgtgagtgtg--cccaaactttttgcatctgggtttgtccctaag |
42560414 |
T |
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