View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_54 (Length: 235)
Name: NF19467_low_54
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 40728090 - 40728220
Alignment:
| Q |
16 |
atcaacctacatcacacatggtaattctccagctgaacatctttatccttcaaaggctcatactctccatgataaacttcaagatgatcagacaaagcag |
115 |
Q |
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| T |
40728090 |
atcaacctacatcacacatggtaattctccagctgaacatctttatccttcaaaggctcatactctccatgataaacttcaagatgatcagacaaagcag |
40728189 |
T |
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| Q |
116 |
acttgtcaatactttgatgatgataagactt |
146 |
Q |
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| T |
40728190 |
acttgtcaatactttgatgatgataagactt |
40728220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 40724123 - 40724194
Alignment:
| Q |
75 |
atactctccatgataaacttcaagatgatcagacaaagcagacttgtcaatactttgatgatgataagactt |
146 |
Q |
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| T |
40724123 |
atactctccatgataaacttcaagataatcgaacaaagcagaattgttaatactctaatgatggtaagactt |
40724194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 10108234 - 10108130
Alignment:
| Q |
37 |
taattctccagctgaacatctttatccttcaaaggctcatactctccatgataaacttcaagatgatcagacaaagcagacttgtcaatactttgatgat |
136 |
Q |
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| T |
10108234 |
taattctccaattgaacatccttagccgtcaatggaacatactctccaagataaacttcaagatgatcagccaaagcagatttatcaatattctcatgat |
10108135 |
T |
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| Q |
137 |
gataa |
141 |
Q |
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||||| |
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| T |
10108134 |
gataa |
10108130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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