View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_56 (Length: 214)
Name: NF19467_low_56
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 46098495 - 46098316
Alignment:
| Q |
15 |
caaaggctatgatcatgtgagtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacct |
114 |
Q |
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| T |
46098495 |
caaaggctatgatcatgtgagtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacct |
46098396 |
T |
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| Q |
115 |
caaagcctcgaagatcagaagcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagt |
194 |
Q |
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| T |
46098395 |
caaagcctcgaagatcagaagcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagt |
46098316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 37485230 - 37485093
Alignment:
| Q |
44 |
cataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagcttcaacc |
143 |
Q |
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| T |
37485230 |
cataggatacctgcgcgctatgacaactgaattgataacctcgtccgttggatgaaacaccgagagcacctcaaagcctcgaagatcattggtatcaaca |
37485131 |
T |
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| Q |
144 |
actggatagagaaaagcacgagccccgtgagcactcct |
181 |
Q |
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| T |
37485130 |
accggatacaaaaaagcacgcgcaccgtgagcactcct |
37485093 |
T |
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