View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19467_low_6 (Length: 501)
Name: NF19467_low_6
Description: NF19467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19467_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 42289196 - 42289659
Alignment:
| Q |
19 |
aaggaacaacactttacattaacaacaatagctctttaagtgatcatcaagttggttttgtcaattcaatgcaacatggtcaaaacatgtctagtcctca |
118 |
Q |
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| T |
42289196 |
aaggaacaacactttacattaacaacaatagctctttaagtgatcatcaagttggttttgtcaattcaatgcaacatggtcaaaacatgtctagtcctca |
42289295 |
T |
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| Q |
119 |
catgtctgccactgcattgcttcaaaaagcttctcagattggttcaactaattctaccaacaataacaaaggtagtaataatgatcataaatcaggtgat |
218 |
Q |
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| T |
42289296 |
catgtctgccactgcattgcttcaaaaagcttctcagattggttcaactaattctaccaacaataacaaaggtagtaataatgatcataaatcaggtgat |
42289395 |
T |
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| Q |
219 |
agggactttgttgtgtctgatcacaacaacatcaatgccacttttggaaatagaagttcaagtattgaaaatgatcatgacaacaacgatcttcatggat |
318 |
Q |
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| T |
42289396 |
agggactttgttgtgtctgatcacaacaacatcaatgccacttttggaaatagaagttcaagtattgaaaatgatcatgacaacaacgatcttcatggat |
42289495 |
T |
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| Q |
319 |
tgataaactctattgcaaatggaaacacatcatccatatttggcaatgaaagcaaccttaatatgagatttggtggatctgataagttaactttagattt |
418 |
Q |
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| T |
42289496 |
tgataaactctattgcaaatggaaacacatcatccatatttggcaatgaaagcaatcttaatatgagatttggtggatctgataagttaactttagattt |
42289595 |
T |
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| Q |
419 |
tcttggtgttggaggaatggtcagaaatatgagtggtggattttcacaaagtgaacaacaacgt |
482 |
Q |
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| T |
42289596 |
tcttggtgttggaggaatggtcagaaatatgagtggtggattttcacaaagtgaacaacaacgt |
42289659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 12801176 - 12801113
Alignment:
| Q |
387 |
tttggtggatctgataagttaactttagattttcttggtgttggaggaatggtcagaaatatga |
450 |
Q |
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| T |
12801176 |
tttggaggatcagataaattgactttggattttcttggtgttggaggaatggtgagaaatatga |
12801113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 12801419 - 12801370
Alignment:
| Q |
117 |
cacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaac |
166 |
Q |
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| T |
12801419 |
cacatgtcggcaactgcattgcttcaaaaagctgctcaaattggttcaac |
12801370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 12777562 - 12777616
Alignment:
| Q |
113 |
tcctcacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaact |
167 |
Q |
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| T |
12777562 |
tcctcacatgtcagcaactgctttgcttcaaaaagcttctcaaatgggtgcaact |
12777616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 36990848 - 36990901
Alignment:
| Q |
114 |
cctcacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaact |
167 |
Q |
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| T |
36990848 |
cctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaact |
36990901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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