View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19468_high_1 (Length: 391)

Name: NF19468_high_1
Description: NF19468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19468_high_1
NF19468_high_1
[»] chr4 (10 HSPs)
chr4 (1-373)||(24894508-24894878)
chr4 (240-311)||(55520939-55521010)
chr4 (156-312)||(40197828-40197980)
chr4 (244-312)||(29010105-29010173)
chr4 (248-314)||(24799393-24799459)
chr4 (153-239)||(53711783-53711869)
chr4 (154-215)||(47533704-47533765)
chr4 (252-313)||(55521061-55521122)
chr4 (252-312)||(9675061-9675121)
chr4 (240-312)||(47533817-47533889)
[»] chr3 (3 HSPs)
chr3 (240-312)||(1699932-1700004)
chr3 (157-230)||(1700041-1700113)
chr3 (245-313)||(40362073-40362141)
[»] chr2 (7 HSPs)
chr2 (152-215)||(37210215-37210278)
chr2 (156-242)||(29927697-29927783)
chr2 (157-234)||(3256966-3257043)
chr2 (156-239)||(32978970-32979053)
chr2 (156-230)||(38342360-38342433)
chr2 (153-230)||(28814663-28814740)
chr2 (252-312)||(15333273-15333333)
[»] chr6 (7 HSPs)
chr6 (240-313)||(32549403-32549476)
chr6 (155-215)||(1038296-1038356)
chr6 (156-215)||(32549528-32549587)
chr6 (240-314)||(214734-214808)
chr6 (239-312)||(11004298-11004371)
chr6 (253-312)||(3626972-3627031)
chr6 (240-312)||(3626850-3626920)
[»] chr1 (8 HSPs)
chr1 (240-312)||(28190485-28190557)
chr1 (240-313)||(3360486-3360559)
chr1 (244-312)||(31507345-31507413)
chr1 (240-312)||(28190603-28190675)
chr1 (252-312)||(39939317-39939377)
chr1 (273-314)||(7438811-7438852)
chr1 (153-214)||(9688336-9688397)
chr1 (252-312)||(7438883-7438943)
[»] chr7 (9 HSPs)
chr7 (156-215)||(20183029-20183088)
chr7 (155-239)||(33487283-33487367)
chr7 (253-312)||(35582188-35582247)
chr7 (244-314)||(33487181-33487251)
chr7 (255-314)||(5998462-5998521)
chr7 (156-304)||(42082747-42082891)
chr7 (155-217)||(25244177-25244239)
chr7 (254-313)||(30458107-30458166)
chr7 (244-314)||(35582303-35582374)
[»] chr5 (5 HSPs)
chr5 (240-313)||(11674161-11674234)
chr5 (160-217)||(40767210-40767267)
chr5 (154-217)||(39043523-39043586)
chr5 (252-311)||(38739180-38739239)
chr5 (244-314)||(39043598-39043668)
[»] scaffold0027 (2 HSPs)
scaffold0027 (252-306)||(48578-48632)
scaffold0027 (244-308)||(48687-48751)
[»] chr8 (2 HSPs)
chr8 (244-312)||(31661518-31661586)
chr8 (240-312)||(34646283-34646355)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 24894508 - 24894878
Alignment:
Q  1 acatgtaatggtggtacatcttatctatttgaacataatgatataggtggtacaatctaaggattttaatgaaagacaatttaatttaagcggaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894508 acatgtaatggtggtacatcttatctatttgaacataatgatataggtggtacaatctaaggattttaatgaaagacaatttaatttaagcggaaaatag 24894607  T
Q  101 tgatcctattaaagaccaaacatggagtaaaataaagtgcatgtttttcttatttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaa 200  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  24894608 tgatcctattaaagaccgaacatggagtaaaataaagtgcat-tttttcttatttgaaaattgatgttcccacatcaaaggttgtaatgaaacaccacaa 24894706  T
Q  201 aattaccaatataaccttactggcagttaattgctgatggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtggga 300  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894707 aattaccaatataactttattggcagttaattgttgatggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtggga 24894806  T
Q  301 aaaacaattttcttcttattcatacttcatgaaattaaaatacacacatttgtttgattttcatggatgcttc 373  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24894807 aaaacaattttcttcttattcatacttcatgaaa-taaaatacacacatttgtttgattttcatggatgcttc 24894878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 55521010 - 55520939
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaatttt 311  Q
    |||| |||||| || ||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||    
T  55521010 gatgtaatttggggctaaacttgtcatttcatggtgtttcttagctttgtgtgaagtgggaaaaacaatttt 55520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 40197828 - 40197980
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggatggaatttgaggtt 255  Q
    |||||||| ||||||||||| |||||||||    ||| ||||  |||||| ||||||||| | |  ||||||||| ||| |||||||    |||| ||||    
T  40197828 gaaaattgttgttcccacatcaaaggttgctcataaaaaccatgaaattatcaatataacttcatcggcagttaactgccgatggat----tttggggtt 40197923  T
Q  256 aaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||| || | ||||||  |||||||||||||||||||||||||| ||||  |||||||    
T  40197924 aaatttatcattttatagtgtttcttagcattgtgtgaagtggaaaaaggaattttc 40197980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 29010105 - 29010173
Alignment:
Q  244 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||  ||||||| ||||| || |||||    
T  29010105 gaatttgaggttaaatttgtcattttatggtgtttcttagcattgaatgaagtgtgaaaagcatttttc 29010173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 24799393 - 24799459
Alignment:
Q  248 ttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    |||| |||||||||||| ||| | ||||||||||  | |||| ||||||||||||||||||||||||    
T  24799393 ttgaagttaaacttgtgttttcatggtgtttcttgactttgtttgaagtgggaaaaacaattttctt 24799459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 53711869 - 53711783
Alignment:
Q  153 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 239  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||||||| ||||||| |||| || |  ||||||||| || |||||    
T  53711869 tttgaaaattgatgctctcatcttaaaggttgctatgaaacaccacaaatttaccaacataatctcatgggcagttaactgttgatg 53711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 47533704 - 47533765
Alignment:
Q  154 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    ||||||||||  ||||| |||||||||||||  | ||||||||||||| |||||||||||||    
T  47533704 ttgaaaattgtcgttcctacattaaaggttgttaggaaacaccacaaatttaccaatataac 47533765  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 55521061 - 55521122
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 313  Q
    |||||||||||| |||| | ||||||||||||| |||| ||||||| ||||| |||||||||    
T  55521061 ggttaaacttgttatttcatggtgtttcttagctttgtttgaagtgtgaaaagcaattttct 55521122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 9675061 - 9675121
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||||||||||| |  |||||||||| | |||||||||||| ||||| ||||||||    
T  9675061 ggttaaacttgtgatttcatagtgtttcttaactttgtgtgaagtgagaaaagcaattttc 9675121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 47533817 - 47533889
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||| |||||||||||||| || | |||| |  |||||||||||||||| |||||||| ||||  ||||||||    
T  47533817 gatgaaatttgaggttaaatttatcatttaattgtgtttcttagcattgcgtgaagtgtgaaaggcaattttc 47533889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 1700004 - 1699932
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||| |||| |||||||||    
T  1700004 gatggaatttgaggttaaatttgttatttcatggtgtttcttagcattgtgtgaagtgtgaaagacaattttc 1699932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 1700113 - 1700041
Alignment:
Q  157 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 230  Q
    ||||||||||||||||| || |||||||| | ||||||| |  ||||||||||||||| || || |||||||||    
T  1700113 aaaattgatgttcccac-ttcaaggttgctaggaaacactatgaaattaccaatataatctcaccggcagttaa 1700041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 40362073 - 40362141
Alignment:
Q  245 aatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 313  Q
    |||||| ||||||| || | |||||| |||||||||||||||||| |||| || ||||  |||||||||    
T  40362073 aatttggggttaaatttttcattttatggtgtttcttagcattgtatgaaatgtgaaaggcaattttct 40362141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 37210215 - 37210278
Alignment:
Q  152 atttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  37210215 atttgaaaattgatgttcccacatcaaaggttgctaggaaacaccacgaaattaccaatataac 37210278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 29927697 - 29927783
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggat 242  Q
    |||| ||| ||||||||||| ||||||||  | |||||||||| |||||||||||||||||| |  ||||||||| |||||||||||    
T  29927697 gaaatttgttgttcccacatcaaaggttgataggaaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggat 29927783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 3256966 - 3257043
Alignment:
Q  157 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgc 234  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||||||||||| ||||||| |  |||| ||||||||    
T  3256966 aaaattgttattcccacattaaaggttgctacgaaacaccacaaaattaccaacataacctcatcggcaattaattgc 3257043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 32978970 - 32979053
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 239  Q
    |||||||| ||||||||||| | ||||||| | ||||||||||||||||| |||||||| || | ||| |||||| ||| ||||    
T  32978970 gaaaattgttgttcccacatcataggttgctaggaaacaccacaaaattatcaatataaactcattggtagttaactgccgatg 32979053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 38342433 - 38342360
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 230  Q
    |||||||| ||||||||| | |||| |||| |||||||||||| |||||||||||||||||| |  |||||||||    
T  38342433 gaaaattgttgttcccacgtcaaag-ttgctatgaaacaccacgaaattaccaatataacctcatcggcagttaa 38342360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 28814663 - 28814740
Alignment:
Q  153 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaa 230  Q
    ||||||||||||||||||||  ||||||||||  |||||| ||||| ||||||  ||||||| |||| || |||||||    
T  28814663 tttgaaaattgatgttcccaagttaaaggttgttatgaaataccacgaaattattaatataatcttattgacagttaa 28814740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 15333273 - 15333333
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||||||||||| |||||| | ||||||||| | |||| ||||||||||||| ||||||||    
T  15333273 ggttaaacttgtcattttatgatgtttcttaactttgtttgaagtgggaaaagcaattttc 15333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 32549476 - 32549403
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 313  Q
    |||| |||||| |||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||    
T  32549476 gatgaaatttggggttaaacttgtcatttaatggtgtttcttagcattgtgtgaaatgtgaaaaacaattttct 32549403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 1038296 - 1038356
Alignment:
Q  155 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    ||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  1038296 tgaaaattgatgttcccacatcaaaggttgttatgaaacacaacaaaattaccaatataac 1038356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 32549587 - 32549528
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    |||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||    
T  32549587 gaaaattgatgttcccacatcaaaagttgctatgaaacaccacgaaattaccaatataac 32549528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 214808 - 214734
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    |||| ||||||| |||||| |||| |||| |   |||||||||||||||| ||||||||||||||||||||||||    
T  214808 gatgtaatttgaagttaaatttgtcatttcataatgtttcttagcattgtatgaagtgggaaaaacaattttctt 214734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 11004298 - 11004371
Alignment:
Q  239 ggatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||||||||||| |||||||||||| ||||||   ||||||||||| ||||||||||||| ||||  |||||||    
T  11004298 ggatggaatttggggttaaacttgtcattttataatgtttcttagctttgtgtgaagtggaaaaagaaattttc 11004371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 3626972 - 3627031
Alignment:
Q  253 gttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||||| |||||| ||||||||||| | |||| ||| ||||||||||||||||||    
T  3626972 gttaaacttgtaattttatggtgtttcttaactttgtttgatgtgggaaaaacaattttc 3627031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 3626920 - 3626850
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||||||||||  ||||||||||| |||| | ||||||| ||| |  ||||||||||||||||| ||||||||    
T  3626920 gatggaatttgcagttaaacttgttatttcatggtgttttttaac--tgtgtgaagtgggaaaagcaattttc 3626850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 28190557 - 28190485
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||| ||||||||||||||||||| |||| | |||||||||| || |||||||||||||||||| ||||||||    
T  28190557 gatgaaatttgaggttaaacttgtcatttcatggtgtttctttgctttgtgtgaagtgggaaaagcaattttc 28190485  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 3360486 - 3360559
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 313  Q
    ||||||||||||| ||||| |||| |||| | ||||||||||| | |||| |||||||| ||||||||||||||    
T  3360486 gatggaatttgagattaaaattgtcatttcatggtgtttcttaactttgtttgaagtggaaaaaacaattttct 3360559  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 31507345 - 31507413
Alignment:
Q  244 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||||| ||||||||||| | |||| | ||||||||||||  ||||||||| |||||||||||||||||    
T  31507345 gaatttaaggttaaacttatcatttcatggtgtttcttagttttgtgtgaaatgggaaaaacaattttc 31507413  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 28190603 - 28190675
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||| ||||||||||||||||||| |||| | | ||||||||||   ||| ||||||||||||| ||||||||    
T  28190603 gatgaaatttgaggttaaacttgtcatttaatgttgtttcttagttctgtttgaagtgggaaaagcaattttc 28190675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 39939317 - 39939377
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||||||||| | |||| | ||||||||||||| |||| |||||||||||||| |||||||    
T  39939317 ggttaaacttatcatttcatggtgtttcttagctttgtttgaagtgggaaaaataattttc 39939377  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 7438852 - 7438811
Alignment:
Q  273 gtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    |||||||||||| |||| ||||||||||||||||| ||||||    
T  7438852 gtgtttcttagctttgtttgaagtgggaaaaacaactttctt 7438811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 9688397 - 9688336
Alignment:
Q  153 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 214  Q
    |||||||||||||||||||| || || ||| |  |||||||||||| ||||||| |||||||    
T  9688397 tttgaaaattgatgttcccatatgaatggtggatatgaaacaccacgaaattactaatataa 9688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 7438883 - 7438943
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    |||||||||||| |||| |  || ||| ||||| |||| ||||||||||||||||||||||    
T  7438883 ggttaaacttgtcatttcatagtattttttagctttgtatgaagtgggaaaaacaattttc 7438943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 20183029 - 20183088
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    |||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||    
T  20183029 gaaaattgatgttcccacgttaaaggttgctataaaacaccacaaaattatcaatataac 20183088  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 33487367 - 33487283
Alignment:
Q  155 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatg 239  Q
    ||||||||||||||||| ||| |||| |||| |||||||||||| |||||| |||||||||| ||  ||||||||| ||| ||||    
T  33487367 tgaaaattgatgttcccgcatcaaagattgctatgaaacaccacgaaattatcaatataaccctatgggcagttaactgccgatg 33487283  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 35582247 - 35582188
Alignment:
Q  253 gttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||| | |||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  35582247 gttaaacttattatttcacggtgtttcttagctttgtttgaagtgggaaaaacaattttc 35582188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 33487251 - 33487181
Alignment:
Q  244 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    |||||||| |||||| |||| |||||| ||||||||||||||||| || ||||| ||||| ||||||||||    
T  33487251 gaatttgaagttaaatttgttattttatggtgtttcttagcattgagtaaagtgtgaaaagcaattttctt 33487181  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 5998462 - 5998521
Alignment:
Q  255 taaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    ||||||||| |||||| | ||||||||||| |||| |||| |||||||||||||||||||    
T  5998462 taaacttgtcattttatgatgtttcttagctttgtttgaaatgggaaaaacaattttctt 5998521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 304
Target Start/End: Complemental strand, 42082891 - 42082747
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttactggcagttaattgctgatggatggaatttgaggtt 255  Q
    |||||| | ||||||||||| | || |||| |||||||||||| ||||||||||||||| |  | ||| ||| || ||    | |||| |||||||||||    
T  42082891 gaaaatcgttgttcccacatcatagattgctatgaaacaccacgaaattaccaatataatcccattggtagtaaactg----tcgatgaaatttgaggtt 42082796  T
Q  256 aaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaa 304  Q
    ||| |||| |||| | ||||||||||||||| |  ||||||| ||||||    
T  42082795 aaatttgtcatttcatggtgtttcttagcatcgaatgaagtgtgaaaaa 42082747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 25244177 - 25244239
Alignment:
Q  155 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    |||| |||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25244177 tgaagattgctgttcccacatcaaaggatgcaaggaaacaccagaaaaataccaatataacct 25244239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 30458166 - 30458107
Alignment:
Q  254 ttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 313  Q
    |||||||||| |||| |  ||||||| |||| |||| |||||||||||||||||||||||    
T  30458166 ttaaacttgtcatttcatagtgtttcgtagctttgtttgaagtgggaaaaacaattttct 30458107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 35582303 - 35582374
Alignment:
Q  244 gaatttgaggttaaa-cttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    ||||||||||||||| ||| | |||| |  |||||||||||| | |||||||||||||||| ||||||||||    
T  35582303 gaatttgaggttaaaacttatcatttcatagtgtttcttagcttcgtgtgaagtgggaaaagcaattttctt 35582374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 11674234 - 11674161
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttct 313  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||| ||||||   |||| ||||||||||||||    
T  11674234 gatggaatttgaggttaaacttgttattttatggtatttcttagccttgtgtacggtggaaaaaacaattttct 11674161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 40767267 - 40767210
Alignment:
Q  160 attgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    |||||||||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||    
T  40767267 attgatgttcccacatcaaagggtgctatgaaacaccagaaaaataccaatataacct 40767210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 39043523 - 39043586
Alignment:
Q  154 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    ||||||||| |||||||||||| ||| ||||| | ||||||||| ||||||||||| |||||||    
T  39043523 ttgaaaattaatgttcccacatcaaaagttgctaggaaacaccataaaattaccaaaataacct 39043586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 38739180 - 38739239
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaatttt 311  Q
    |||||||||| | |||||| ||| ||||||||| |||||||| ||| |||||||||||||    
T  38739180 ggttaaacttatcattttatggtatttcttagctttgtgtgaggtgagaaaaacaatttt 38739239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 39043598 - 39043668
Alignment:
Q  244 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttctt 314  Q
    |||||||| |||||| ||||  ||| | ||||||||||||||||||||||||||  |||  ||||||||||    
T  39043598 gaatttgacgttaaatttgtcctttcatggtgtttcttagcattgtgtgaagtgtaaaaggcaattttctt 39043668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 48632 - 48578
Alignment:
Q  252 ggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaaca 306  Q
    |||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  48632 ggttaaacttgttattttatggtgttccttagcattgtttgaagtgggaaaaaca 48578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 48687 - 48751
Alignment:
Q  244 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaat 308  Q
    |||||||||||||||||| | |||| |  || |||||||||| |||||||||| |||||| ||||    
T  48687 gaatttgaggttaaacttatcatttcatagtatttcttagcaatgtgtgaagttggaaaagcaat 48751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 31661586 - 31661518
Alignment:
Q  244 gaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||||||||| |||| |||| |  |||||||||| ||||| ||||| || ||||||||||||||    
T  31661586 gaatttgaggttaaaattgtcatttcatagtgtttcttatcattgagtgaaatgcgaaaaacaattttc 31661518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 34646283 - 34646355
Alignment:
Q  240 gatggaatttgaggttaaacttgtgattttacggtgtttcttagcattgtgtgaagtgggaaaaacaattttc 312  Q
    ||||||||||| | ||||| |||| |||| | ||||||| ||||||||||||||||||  ||| |||||||||    
T  34646283 gatggaatttgggattaaatttgtcatttcatggtgtttattagcattgtgtgaagtgtaaaagacaattttc 34646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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