View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19469_high_3 (Length: 529)
Name: NF19469_high_3
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 24385690 - 24386191
Alignment:
| Q |
19 |
catgactctgtatgtaattatcttccatttgctaagatgatgtattgttccaatttgaaatgcaaaaagaaataacatatatagtgaaaagtggaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24385690 |
catgactctgtatgtaattatcttccatttgctaagatgatgtattgttccaatttgaaatgcaaaaagaaataacatatatagtgaaaagtggaattga |
24385789 |
T |
|
| Q |
119 |
gaaacaagctgataaacatgtgaaacatataagtaaacctatacagataacagattcattttgtttatagatctatagattgatgaaagaaagaaagnnn |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24385790 |
gaaacaagctgataaacatgtgaaacatataagtaaacctatacagataacagattcattttgtttatagatctatagattgatgaaagaaagaaagaaa |
24385889 |
T |
|
| Q |
219 |
nnnn-tttattttatttgctcagactttatattagtggaacactttgatctcatgttgttgtggtaacactttgtatcaaccaagaactcaacaagcaca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24385890 |
aaaaatttattttatttgctcagactttatattagtggaacactttgatctcatgttgttgtggtaacactttgtatcaaccaagaactcaacaagcaca |
24385989 |
T |
|
| Q |
318 |
aacacataaatgaagtccttcggattgttcgatggctttctgtcgatgaggtaagacaacattcttcaagcacacaataaggtagattggttgtgagaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24385990 |
aacacataaatgaagtccttcggattgttcgatggctttctgtcgatgaggtaagacaacattcttcaagcacacaataaggtagattggttgtgagaat |
24386089 |
T |
|
| Q |
418 |
atagcctactatcttttattattattcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaactttggtaacctt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24386090 |
atagcctactatcttttattattattcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaactttggtaacctt |
24386189 |
T |
|
| Q |
518 |
tg |
519 |
Q |
| |
|
|| |
|
|
| T |
24386190 |
tg |
24386191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 358 - 513
Target Start/End: Complemental strand, 16153393 - 16153239
Alignment:
| Q |
358 |
tgtcgatgaggtaagacaacattcttcaagcacacaataaggtagattggttgtgagaatatagcctactatcttttattattattcaaaactttgttga |
457 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16153393 |
tgtccatgagataagacaactttcttcaagcccacaataaggtagattggttgtgagaatataatctactatcttttattattattcaaaactttgttga |
16153294 |
T |
|
| Q |
458 |
tagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaactttggtaa |
513 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16153293 |
tagttaaatc-agcctaacaagtatgaaaattgaagacaatgaagaactttggtaa |
16153239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 426 - 513
Target Start/End: Complemental strand, 16158338 - 16158249
Alignment:
| Q |
426 |
ctatcttttattattat--tcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaactttggtaa |
513 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
16158338 |
ctatcttttattattatattaaaaactttgttgatagttaaatcaagcctaacaagtatgaaaattgaaaacaatgaacaactttggtaa |
16158249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 16158478 - 16158374
Alignment:
| Q |
287 |
ctttgtatcaaccaagaactcaacaagcacaaacacataaatgaagtccttcggatt--gttcgatggctttctgtcgatgaggtaagacaacattcttc |
384 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| || | ||| | || ||||| |||| ||||||||||||||| |||||| |
|
|
| T |
16158478 |
ctttgtatcaacgaagaactcaacaagcacaaa-acataaatgaagtcatttgtatttcttattatagctttatgtccatgaggtaagacaactttcttc |
16158380 |
T |
|
| Q |
385 |
aagcac |
390 |
Q |
| |
|
|||||| |
|
|
| T |
16158379 |
aagcac |
16158374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 266 - 405
Target Start/End: Original strand, 8774669 - 8774806
Alignment:
| Q |
266 |
tctcatgttgttgtggtaacactttgtatcaaccaagaactcaacaagcacaaacacataaatgaagtccttcggattgttcgatggctttctgtcgatg |
365 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||| || |||||||| ||||||||||||||||||||| | |||| ||| |||||| || | |
|
|
| T |
8774669 |
tctcatgttgttgtggtaacattttgcattaaccaagagcttaacaagcaaaaacacataaatgaagtcctttgtattgcctgatagctttc--tctgtt |
8774766 |
T |
|
| Q |
366 |
aggtaagacaacattcttcaagcacacaataaggtagatt |
405 |
Q |
| |
|
|||||||||||| ||||| | |||||||||| | |||||| |
|
|
| T |
8774767 |
aggtaagacaactttctttatgcacacaatatgttagatt |
8774806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 48954666 - 48954630
Alignment:
| Q |
470 |
gcctaacaagtatgaaggttgaagacaatgaagaact |
506 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
48954666 |
gcctaacaagtatgaagattgaagacaacgaagaact |
48954630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 4124468 - 4124396
Alignment:
| Q |
133 |
aacatgtgaaacatataagtaaacctatacagataacagattcattttgtttatagatctatagattgatgaaagaaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||| | |||| || | ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4124468 |
aacatgtgaaacatataagtaaacttgtacatatta-------attttgtttatagatctctagattggtgaaagaaaga |
4124396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University