View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19469_high_6 (Length: 302)
Name: NF19469_high_6
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 49274935 - 49274777
Alignment:
| Q |
19 |
attccagacgttagacacaataacatcttaacatgtaacggtaaaatgttgatgtgtttgtaggctacctctttagggttcaggggtttgtgtgaaccat |
118 |
Q |
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| T |
49274935 |
attccagacgttagacacaataacatattaacatgtaacggtaaaatgttgatgtgtttgtaggctacctctttagggttcaggggtttgtgtgaaccat |
49274836 |
T |
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| Q |
119 |
agagctgaagatatggaaaatggttttttcaaagaaagacagagagggacccggttcaa |
177 |
Q |
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| T |
49274835 |
agagctgaagatatggaaaatggttttttcaaagaaagacagagagggacccggttcaa |
49274777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 291
Target Start/End: Original strand, 49254728 - 49254891
Alignment:
| Q |
129 |
atatggaaaatggttttttcaaagaaagacagagagggacccggttcaagaagcatatcataggacgtgtttgttcaagaatt--aatatgtttgttttc |
226 |
Q |
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| T |
49254728 |
atatggaaaaaggtttgtt-agagaaagacagagagggtgctggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttttc |
49254826 |
T |
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| Q |
227 |
tagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
291 |
Q |
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| T |
49254827 |
tagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
49254891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 49271447 - 49271559
Alignment:
| Q |
181 |
gcatatcataggacgtgtttgttcaagaatta--atatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattat |
278 |
Q |
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| T |
49271447 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
49271546 |
T |
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| Q |
279 |
ttcaatgatgatg |
291 |
Q |
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| T |
49271547 |
ttcaatgatgatg |
49271559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 49274763 - 49274685
Alignment:
| Q |
213 |
atatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
291 |
Q |
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| T |
49274763 |
atatgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
49274685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 49267077 - 49267149
Alignment:
| Q |
215 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgat |
287 |
Q |
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| T |
49267077 |
atgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaatgat |
49267149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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