View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19469_high_7 (Length: 285)
Name: NF19469_high_7
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_high_7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 38214787 - 38215031
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| |
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| T |
38214787 |
ggcatgaacattaaccaaccatttctcctcaaacccttctggaatctcttcaggattacctatctctataccaaaaggatccggaatatctgttgctgtt |
38214886 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214887 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
38214986 |
T |
|
| Q |
214 |
tcctgtggctaacatcttctgtgtgtgtgacatattttctttgat |
258 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||| ||||||||||| |
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|
| T |
38214987 |
tcctgtggctatcattttctgtgtgtgtaacatgttttctttgat |
38215031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 38227210 - 38227466
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |
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| T |
38227210 |
ggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctcttcaggattacctatctctataccgaaaggatctggaatatctgttgtcgtt |
38227309 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
213 |
Q |
| |
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||||||||||| || ||||| |||||||| |||| ||| ||||| | || |||||||||||||| || ||||||||||||| ||||||||||||||| |
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| T |
38227310 |
cctcgtgtttctgacccaagtccaaagtattgtgaaatagcatttccctggcatatgccactgttccttacaagaacatgat---cagagttttgaagca |
38227406 |
T |
|
| Q |
214 |
tcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaa |
273 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38227407 |
tcatgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaa |
38227466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 38248825 - 38249081
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||||||| ||| ||| |
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|
| T |
38248825 |
ggcatgaacattaagcaaccatttctcctcaaacccttctggaatctcttcaggactacctgtctctataccaaaaggatctggaatatctgttgtcgtt |
38248924 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| |||| | || |||||||||||||| || ||||||||||||| || |||||||||||| |
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|
| T |
38248925 |
cctcgtgtttctgatccaaggccaaagtattgtggaatggtatttccctggcatatgccactgttccttacaagaacatgat---catagttttgaagca |
38249021 |
T |
|
| Q |
214 |
tcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaa |
273 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
38249022 |
tcatgtggctaccatcttctgtgtgtgtgacatattttctttgataatgtcattcaacaa |
38249081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 38253940 - 38254198
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
|||||||||||||| || |||||| || ||||||||| ||||| |||| |||||||||||| ||||||||| ||||| ||||||||||||| |||| |
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| T |
38253940 |
ggcatgaacattaaccatccatttctcatcaaacccttctggaacctctgcaggattacctacctctataccaaaagggtccggaatatctgtcagtgtt |
38254039 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || |||| | || ||||||||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
38254040 |
cctcttgtttcggatccaaggccaaagtattgtccaagataatttccctggcatatgccactgtttctcacaagaacatgat---cagagttttgtagca |
38254136 |
T |
|
| Q |
214 |
tcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaacc |
275 |
Q |
| |
|
|| |||||||| ||| |||||||||||| |||| ||||||||||| || |||| ||||||| |
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|
| T |
38254137 |
tcatgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatcttccaacaacc |
38254198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 38238739 - 38238903
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||| |
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|
| T |
38238739 |
ggcatgaacattaagcaaccatttttcgtgaaacccttctggaatctcttcaggattgcctatctctataccgaaaggatccggaatatcggtcgccgtt |
38238838 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtt |
178 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| |
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| T |
38238839 |
ccacgtgtttcggatccaaggccaaagtattgtccaagagtatttccttgacatatgccactgtt |
38238903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 38243677 - 38243847
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| || || |||| |||||||||||||||||||||| ||||||||||||||||||| || |||| |
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|
| T |
38243677 |
ggcatgaacattaagcacccatttatcctcggacccttctgaaacctctgcaggattacctatctctataccaaaaggatccggaatatctgttgctgtt |
38243776 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcac |
184 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| || |||| | ||||||||||||||||| ||||| |
|
|
| T |
38243777 |
cctcgtgtttcggatccaatgccaaagtattgtccaagagtatttccctgacatatgccactgttcctcac |
38243847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 38220829 - 38220957
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
||||||||| || |||| |||| | |||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| | | || |
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|
| T |
38220829 |
ggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagtcgccgtc |
38220928 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagta |
142 |
Q |
| |
|
||||||||||| |||||||| |||||||| |
|
|
| T |
38220929 |
cctcgtgtttcagatccaagcccaaagta |
38220957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 17434340 - 17434569
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
|||||||| ||||| |||||| || |||||||||||| |||||| ||| |||||||||||||||||||||| |||||||| ||||| || | | ||| |
|
|
| T |
17434340 |
ggcatgaatattaaacaaccacttctcctcaaacccttctggaatatctgcaggattacctatctctataccaaaaggatctggaatgtcagtcggcgtt |
17434439 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
213 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| | || | | || ||||||||| |||| || |||||||||| || ||||||||||||||| |
|
|
| T |
17434440 |
cctcgtgtttcggatccaaggccgaaatactgtggaagaatatctgcctggcatatgccattgttccttacaagaacataat---cagagttttgaagca |
17434536 |
T |
|
| Q |
214 |
tcctgtggctaacatcttctgtgtgtgtgacat |
246 |
Q |
| |
|
|||| |||||| ||| |||||||| |||||||| |
|
|
| T |
17434537 |
tcctatggctatcattttctgtgtatgtgacat |
17434569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 17455440 - 17455698
Alignment:
| Q |
14 |
ggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctgctgttgtt |
113 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||| |||||| ||| |||||||| ||||| ||||| ||||||||||||||||| | | |||| |
|
|
| T |
17455440 |
ggcatgaatattaaacaaccatttctcctcaaacccttctggaatttctgttggattacccatctccataccaaaaggatccggaatatcggtcggtgtt |
17455539 |
T |
|
| Q |
114 |
cctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttgacatatgccactgtttctcacaagaacatgatcagcagagttttgaagca |
213 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||| | |||| |||| || ||||||||||| ||||| ||| | ||| ||| |||||||||| |
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|
| T |
17455540 |
cctcgtgtttctgatccaaggccgaaatactgtggaagaatatttccttggcaaatgccactgttcctcacgagacctggataagc---tttttgaagca |
17455636 |
T |
|
| Q |
214 |
tcctgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctttgaacaacc |
275 |
Q |
| |
|
|| |||| ||| ||| ||||||||||||| ||| || ||||||| || |||| ||||||| |
|
|
| T |
17455637 |
tcttgtgactatcattttctgtgtgtgtggcatgattactttgatgatatcttccaacaacc |
17455698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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