View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19469_low_1 (Length: 631)
Name: NF19469_low_1
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 20 - 620
Target Start/End: Complemental strand, 39582541 - 39581942
Alignment:
| Q |
20 |
gataagaatctgagaataggggaagatatatcacctgcacttttaaaagccattgaagaatctaagatctcagttattgttttttcggagaattatgcat |
119 |
Q |
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| T |
39582541 |
gataagaatctgagaataggggaagatatatcacctgcacttttaaaagccattgaagaatctaagatctcagttattgttttttcggagaattatgcat |
39582442 |
T |
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| Q |
120 |
cttcgaggtggtgccttggtgaactagtgaagatcatcaaatgcatgaaaagaaacaataaacaaattaccttcccaattttttactgtgttgatctatc |
219 |
Q |
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| T |
39582441 |
cttcgaggtggtgccttggtgaactagtgaagatcatcaaatgcatgaaaagaaacaataaacaaactactttcccaattttttactgtgctgatctatc |
39582342 |
T |
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| Q |
220 |
ggatgtacgaaaccaaagaaatagttatggggaagccatggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagca |
319 |
Q |
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| T |
39582341 |
ggatgtacgaaacgaaagaaatagttatggggaagccatggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagca |
39582242 |
T |
|
| Q |
320 |
atgtctgaagctgcagacttgaaaggtcaccatatccacaatgggtatgtaactacaactttgttcttatgtatgtactttgtttgaacctatattttag |
419 |
Q |
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| T |
39582241 |
ttgtctgaagctgcagacttgaaaggtcaccatatccacaattggtatgtaactacaactttgttcttatgtatgtactttgtttgaacctatattttag |
39582142 |
T |
|
| Q |
420 |
gtgaaataaatctataattgtttaacatgattattcatcccaagttataaatagatatatcagtgcaattcttacacctaaaagaacgtcaaaaatacat |
519 |
Q |
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| T |
39582141 |
gtgaaataaatctataattgtttaacatgattattcatcccaagttataaatagatatatcagtgcaattcttacacctaaaagaacgtcaaaaatacat |
39582042 |
T |
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| Q |
520 |
nnnnnnnttgcattttctgcagtacttgtannnnnnnnnnnnnnnnnncataaaaaatgtgcacaaaattaagaaacagtgtgttgaatttccacaggtt |
619 |
Q |
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| T |
39582041 |
aaaaaaattgcattttttgcagtacttgta-ttttttcttttatttttcataaaaaatgtgcacaagattaagaaacagtgtgttgaatttctacaggtt |
39581943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 23 - 374
Target Start/End: Original strand, 39619242 - 39619593
Alignment:
| Q |
23 |
aagaatctgagaataggggaagatatatcacctgcacttttaaaagccattgaagaatctaagatctcagttattgttttttcggagaattatgcatctt |
122 |
Q |
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||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
39619242 |
aagaatctgagaataggggaagacatttcacctgcactttcaaaagccattgaagaatctaagatcgcagttattgttttttctgagaattatgcatctt |
39619341 |
T |
|
| Q |
123 |
cgaggtggtgccttggtgaactagtgaagatcatcaaatgcatgaaaagaaacaataaacaaattaccttcccaattttttactgtgttgatctatcgga |
222 |
Q |
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| T |
39619342 |
ccaggtggtgccttggcgaactcgttaagataatcgaatgtacgaaaagaaacaaaaaacaaatttcttttccaatctttttccatgttgatccatcaga |
39619441 |
T |
|
| Q |
223 |
tgtacgaaaccaaagaaatagttatggggaagccatggttgctcatgagaataggttcggaaaagattcagaaaatataaaagcatgtaaagcagcaatg |
322 |
Q |
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|||| || | || | ||||||||| | | |||||||||||| ||||||| || ||| |||||||| || |||||| |||||||||| | | ||||| || |
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| T |
39619442 |
tgtaagacatcagaaaaatagttacgagaaagccatggttgatcatgaggttaagtttggaaaagactctgaaaatgtaaaagcatggataacagcattg |
39619541 |
T |
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| Q |
323 |
tctgaagctgcagacttgaaaggtcaccatatccacaatgggtatgtaacta |
374 |
Q |
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|||||||| |||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
39619542 |
tctgaagcagcagacttgaaaggccaccatatcaataccgggtatgtaacta |
39619593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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