View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19469_low_12 (Length: 266)

Name: NF19469_low_12
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19469_low_12
NF19469_low_12
[»] chr2 (19 HSPs)
chr2 (56-266)||(34573916-34574127)
chr2 (29-264)||(14898450-14898691)
chr2 (29-264)||(635949-636190)
chr2 (29-264)||(7910214-7910455)
chr2 (29-264)||(22430015-22430256)
chr2 (29-264)||(22435609-22435850)
chr2 (29-158)||(1525400-1525529)
chr2 (28-158)||(43776658-43776788)
chr2 (29-117)||(11311730-11311818)
chr2 (31-117)||(25231664-25231750)
chr2 (29-117)||(7385247-7385335)
chr2 (23-158)||(25445424-25445556)
chr2 (64-158)||(17319878-17319972)
chr2 (28-117)||(19089141-19089230)
chr2 (93-158)||(19933054-19933119)
chr2 (75-158)||(16443693-16443776)
chr2 (29-104)||(21289951-21290025)
chr2 (32-122)||(19911943-19912033)
chr2 (184-264)||(19912091-19912171)
[»] scaffold0004 (1 HSPs)
scaffold0004 (29-264)||(345922-346163)
[»] chr3 (15 HSPs)
chr3 (29-264)||(2168902-2169143)
chr3 (29-264)||(13990499-13990740)
chr3 (29-264)||(23344043-23344284)
chr3 (29-158)||(9724987-9725116)
chr3 (29-264)||(3110759-3111000)
chr3 (29-158)||(13981019-13981148)
chr3 (29-158)||(40801001-40801130)
chr3 (29-152)||(20454287-20454410)
chr3 (30-117)||(15646683-15646770)
chr3 (67-208)||(26830881-26831027)
chr3 (23-158)||(21883085-21883217)
chr3 (23-158)||(49487090-49487222)
chr3 (37-105)||(29225003-29225071)
chr3 (64-158)||(27546908-27547002)
chr3 (61-117)||(12990587-12990643)
[»] chr1 (13 HSPs)
chr1 (29-158)||(33493299-33493428)
chr1 (29-264)||(15716291-15716532)
chr1 (31-152)||(16168432-16168553)
chr1 (47-152)||(27163565-27163670)
chr1 (29-116)||(22576576-22576663)
chr1 (29-132)||(145767-145872)
chr1 (29-113)||(15552541-15552625)
chr1 (29-117)||(26028366-26028454)
chr1 (23-158)||(31093313-31093445)
chr1 (92-153)||(49624981-49625042)
chr1 (31-117)||(29547425-29547508)
chr1 (29-104)||(11442092-11442167)
chr1 (23-152)||(11659839-11659965)
[»] chr7 (15 HSPs)
chr7 (29-264)||(16648090-16648331)
chr7 (29-264)||(17622451-17622692)
chr7 (29-264)||(32148144-32148385)
chr7 (29-158)||(25498722-25498851)
chr7 (29-158)||(42208575-42208704)
chr7 (29-264)||(42162506-42162747)
chr7 (29-148)||(571057-571176)
chr7 (29-117)||(20124945-20125033)
chr7 (32-117)||(7578205-7578290)
chr7 (23-158)||(340659-340791)
chr7 (23-158)||(8247771-8247903)
chr7 (186-264)||(34326124-34326203)
chr7 (29-117)||(34325976-34326062)
chr7 (32-122)||(26457244-26457334)
chr7 (184-264)||(20125094-20125175)
[»] chr5 (13 HSPs)
chr5 (29-264)||(28367232-28367473)
chr5 (29-264)||(30957848-30958089)
chr5 (29-122)||(19780402-19780495)
chr5 (29-117)||(18080346-18080434)
chr5 (23-158)||(16673170-16673302)
chr5 (23-158)||(35264906-35265038)
chr5 (29-158)||(17945415-17945544)
chr5 (23-158)||(23053744-23053876)
chr5 (68-158)||(24111038-24111128)
chr5 (30-95)||(9362428-9362493)
chr5 (184-263)||(19780267-19780347)
chr5 (64-117)||(19699056-19699109)
chr5 (29-105)||(34648346-34648422)
[»] chr4 (15 HSPs)
chr4 (29-144)||(53529362-53529476)
chr4 (29-158)||(20192955-20193084)
chr4 (29-264)||(6161916-6162157)
chr4 (29-264)||(53981762-53982003)
chr4 (29-117)||(2924306-2924394)
chr4 (29-117)||(22748564-22748652)
chr4 (29-154)||(26057801-26057928)
chr4 (29-104)||(12746977-12747052)
chr4 (23-158)||(25691559-25691691)
chr4 (44-152)||(19570187-19570295)
chr4 (75-158)||(13999708-13999791)
chr4 (23-158)||(23193748-23193880)
chr4 (23-158)||(30674065-30674197)
chr4 (31-98)||(26996840-26996907)
chr4 (185-264)||(2924165-2924245)
[»] chr8 (10 HSPs)
chr8 (30-158)||(34191748-34191876)
chr8 (29-264)||(41048526-41048767)
chr8 (29-117)||(10738647-10738735)
chr8 (29-117)||(23429211-23429299)
chr8 (23-158)||(30714582-30714714)
chr8 (29-158)||(8509449-8509578)
chr8 (29-158)||(17909411-17909540)
chr8 (23-158)||(30722359-30722491)
chr8 (29-161)||(16846059-16846190)
chr8 (30-101)||(32722495-32722566)
[»] chr6 (4 HSPs)
chr6 (29-158)||(6932706-6932835)
chr6 (29-150)||(17270560-17270681)
chr6 (29-117)||(25397594-25397682)
chr6 (31-132)||(19441519-19441618)
[»] scaffold0461 (1 HSPs)
scaffold0461 (29-152)||(12959-13082)
[»] scaffold0014 (1 HSPs)
scaffold0014 (23-158)||(111536-111668)
[»] scaffold0062 (2 HSPs)
scaffold0062 (30-104)||(19535-19609)
scaffold0062 (30-104)||(29703-29777)
[»] scaffold0102 (1 HSPs)
scaffold0102 (23-158)||(13687-13819)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 34574127 - 34573916
Alignment:
Q  56 accaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacga 155  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34574127 accaaatatttctacaaagtcatcgccaagtaaagtttttgagtaacta-tacaaaagattaattgacattcttcatctcgtatataattgtctttacga 34574029  T
Q  156 gggagataatgtgttctacac--nnnnnnncccttaaccatagttttatctcattggatttttctgataagtttttaataaggttgattatcacataata 253  Q
    ||| |||||||||||||||||         ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  34574028 gggtgataatgtgttctacactttttttttcccttaaccatagttttatctcattgggtttttctggtaggtttttaataaggttgattatcacataata 34573929  T
Q  254 ggatgttgtaccc 266  Q
    |||||||||||||    
T  34573928 ggatgttgtaccc 34573916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 14898450 - 14898691
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  14898450 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 14898549  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     |||||||||||||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  14898550 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctacactctttttcccttaaccatggttttatcccattgggttttcctggtaa 14898649  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  14898650 ggtttttaacgaggcagattataacacaaaaggatgttgtac 14898691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 635949 - 636190
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  635949 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 636048  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  636049 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 636148  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  636149 ggtttttaacgaggcagattataacacaaaaggatgttgtac 636190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 7910455 - 7910214
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  7910455 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 7910356  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  7910355 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactatttttcccttaaccatggttttatcccattgggttttcctggtaa 7910256  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  7910255 ggtttttaacgaggcagattataacacaaaaggatgttgtac 7910214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 22430015 - 22430256
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  22430015 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 22430114  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  22430115 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 22430214  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  22430215 ggtttttaacgaggcagattataacacaaaaggatgttgtac 22430256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 22435609 - 22435850
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  22435609 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 22435708  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  22435709 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 22435808  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  22435809 ggtttttaacgaggcagattataacacaaaaggatgttgtac 22435850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 1525400 - 1525529
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || ||||||||||||||| | ||||||||| |||||||||||| | | ||||||||  || |  ||||    
T  1525400 ctaatttggagaagagtatggagatatatcatatctttctacaaagtcactgtcaagtaaagattttgagtaacttgcataaaagattgtttaaacttct 1525499  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    ||||||| |||||||||||||||| |||||    
T  1525500 tcatctcatatataattgtctttatgaggg 1525529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 43776658 - 43776788
Alignment:
Q  28 actaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattc 127  Q
    ||||||||||||||||||||||||||| | || || |||||||| |||||||  ||||||||  |||||||||||||| | ||||||||  || |  |||    
T  43776658 actaatttggagaagagtatggagatatatcatatctttctacagagtcaccttcaagtaaatattttgagtaactagcataaaagattgtttaaacttc 43776757  T
Q  128 ttcatctcgtatataattgtctttacgaggg 158  Q
    ||| |||| |||||||||||||||| |||||    
T  43776758 ttcgtctcatatataattgtctttatgaggg 43776788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 11311730 - 11311818
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||||||||||| || || |||||||| |||| |||||| |||||| ||||||||||| |||| |||||||||    
T  11311730 ctaatttggagaagagtatggagataaatcatatttttctacagagtccccgccaggtaaagattttgagtaaccagtataaaagatta 11311818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 25231664 - 25231750
Alignment:
Q  31 aatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||| ||||| | || || |||||||| ||||| |||||||||||| |||||||||||||||| |||||||||    
T  25231664 aatttggagaagagtatgaagatagatcatatctttctacagagtcatcgccaagtaaagattttgagtaactagtataaaagatta 25231750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 7385335 - 7385247
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||||| ||| | || || |||||||| |||||||||||||||||  ||||||||||| |||  |||||||||    
T  7385335 ctaatttggagaagagtatggaaatagatcatatctttctacagagtcaccgccaagtaaatattttgagtaaccagtgtaaaagatta 7385247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 25445556 - 25445424
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  25445556 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 25445460  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| ||||| |||||||||| |||||    
T  25445459 ctttcttcgtctcatatatgattgtctttatgaggg 25445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 17319972 - 17319878
Alignment:
Q  64 tttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacgaggg 158  Q
    |||||||| |||||||| ||||||||| |||||  ||||||| | ||||||||| | ||| ||| || || | ||||||||||||||||||||||    
T  17319972 tttctacatagtcaccgtcaagtaaagattttggataactagcataaaagattattagaccttcctcgtcacatatataattgtctttacgaggg 17319878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 19089141 - 19089230
Alignment:
Q  28 actaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    ||||||||||||||||| ||||||||| | || || || ||||| ||||||||| |||||| | |||| |||||| |||| |||| ||||    
T  19089141 actaatttggagaagagaatggagatatatcatatcttcctacagagtcaccgcaaagtaatgattttaagtaaccagtataaaaaatta 19089230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 19933054 - 19933119
Alignment:
Q  93 tttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacgaggg 158  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| |||| |||||||| || |||||    
T  19933054 tttgagtaactagtacaacagattatttgaccttcttcgtctcatatacaattgtctatatgaggg 19933119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 16443776 - 16443693
Alignment:
Q  75 tcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacgaggg 158  Q
    |||| ||||||||||| |||||||| |   ||| ||||||||| ||||| |||||| |||| ||||| |||||||||| |||||    
T  16443776 tcactgccaagtaaagattttgagtgatcggtataaaagattatttgactttcttcgtctcatatatgattgtctttatgaggg 16443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 21290025 - 21289951
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaacta 104  Q
    ||||||||||||| |||||| ||||| | || || ||| |||| |||||||||||||||||| ||||| |||||||    
T  21290025 ctaatttggagaaaagtatgaagatatatcatattttt-tacagagtcaccgccaagtaaagattttgggtaacta 21289951  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 19911943 - 19912033
Alignment:
Q  32 atttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    ||||||||||||||||| ||||| |  | || |||| ||| |||||| ||||||||||| |||||||||  || || ||||||||| ||||    
T  19911943 atttggagaagagtatgaagatagattatatctttcaacagagtcactgccaagtaaagattttgagtaggtaatataaaagattatttga 19912033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 19912091 - 19912171
Alignment:
Q  184 cccttaaccatagttttatctcattggatttttctgataagtttttaataaggttgattatcacataataggatgttgtac 264  Q
    ||||||||||| |||||||  |||||| |||| ||| |||| ||||||| ||| | ||||| ||| || ||||||||||||    
T  19912091 cccttaaccatggttttattccattgggttttcctggtaagattttaatgaggctcattatgacacaaaaggatgttgtac 19912171  T

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Target: scaffold0004 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 346163 - 345922
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  346163 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 346064  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  346063 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 345964  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  345963 ggtttttaacgaggcagattataacacaaaaggatgttgtac 345922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 2169143 - 2168902
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  2169143 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 2169044  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  2169043 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 2168944  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  2168943 ggtttttaacgaggcagattataacacaaaaggatgttgtac 2168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 13990499 - 13990740
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  13990499 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 13990598  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  13990599 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 13990698  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  13990699 ggtttttaacgaggcagattataacacaaaaggatgttgtac 13990740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 23344043 - 23344284
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  23344043 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 23344142  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  23344143 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 23344242  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  23344243 ggtttttaacgaggcagattataacacaaaaggatgttgtac 23344284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 9725116 - 9724987
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||  | ||||||||  || |  ||||    
T  9725116 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactaacataaaagattgtttaaacttct 9725017  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    ||||||| |||||||||||||||| |||||    
T  9725016 tcatctcatatataattgtctttatgaggg 9724987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 3111000 - 3110759
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    ||||||||||||||||| |||||||| | || || |||||||| |||||||  ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  3111000 ctaatttggagaagagtttggagatatatcatatctttctacagagtcaccatcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 3110901  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||||||| |||    
T  3110900 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaa 3110801  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  3110800 ggtttttaacgaggcagattataacacaaaaggatgttgtac 3110759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 13981148 - 13981019
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    ||||||||||||||||||||| |||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  13981148 ctaatttggagaagagtatggggatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 13981049  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  13981048 tcgtctcatatataattgtctttatgaggg 13981019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 40801130 - 40801001
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| |  | || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||| || |  || |    
T  40801130 ctaatttggagaagagtatggagatatattatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattatttaaactttt 40801031  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  40801030 tcgtctcatatataattgtctttatgaggg 40801001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 20454287 - 20454410
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||| || || ||||||| || || | ||| |||||||||||||||||| || |||||||||||||||  |||| |||| ||||| ||||    
T  20454287 ctaatttggagaagggtgtgaagataaatcagatctctcttcaaagtcaccgccaagtatagcttttgagtaactagtgtaaaatattatttgactttct 20454386  T
Q  129 tcatctcgtatataattgtcttta 152  Q
    ||||||| |||| |||||||||||    
T  20454387 tcatctcatatacaattgtcttta 20454410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 15646770 - 15646683
Alignment:
Q  30 taatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||| |||||||||||||||||||||| |||||||||| |||||||||  |  |||||||| |||||||||||||||| ||| |||||    
T  15646770 taatgtggagaagagtatggagataaatcaaatatttccacaaagtcaatgtgaagtaaagattttgagtaactagtataaacgatta 15646683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 26830881 - 26831027
Alignment:
Q  67 ctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctt--tacgagggaga--- 161  Q
    |||||||||||  ||||  ||||  |||||||||||||||||| ||||||  |||||||| |||||||  ||||||||| ||||  || ||||||||       
T  26830881 ctacaaagtcattgccacataaaacttttgagtaactagtacagaagattcgttgacatttttcatctaatatataattatctttataagagggagagat 26830980  T
Q  162 taatgtgttctacacnnnnnnncccttaaccatagttttatctcatt 208  Q
     ||||||||||||||       |||||||||||||||||||||||||    
T  26830981 aaatgtgttctacacttattttcccttaaccatagttttatctcatt 26831027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 21883085 - 21883217
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  21883085 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 21883181  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  21883182 ctttcttcgtctcatagatgattgtctttatgaggg 21883217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 49487222 - 49487090
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| |  ||||||||| |||| |||||||||| || ||| |||| ||||    
T  49487222 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgct-ccaagtaaactttt-gagtaactagaac-aaatattatttga 49487126  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  49487125 ctttcttcgtctcatagatgattgtctttatgaggg 49487090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 29225003 - 29225071
Alignment:
Q  37 gagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactag 105  Q
    |||||||||||| |||||||||  || ||||||||||||| |||  |||||||| ||||||||| ||||    
T  29225003 gagaagagtatgaagataaacctgatctttctacaaagtcgccgttaagtaaagcttttgagtagctag 29225071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 27546908 - 27547002
Alignment:
Q  64 tttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacgaggg 158  Q
    |||||| | ||||||||  |||||||| | ||| |||||||| | |||||||||| |||| |||||| ||||  ||| ||||||||||| |||||    
T  27546908 tttctatatagtcaccgttaagtaaagatgttgggtaactagcataaaagattaactgaccttcttcgtctcacataaaattgtctttatgaggg 27547002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 12990587 - 12990643
Alignment:
Q  61 atatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||| || ||| |||| ||||||||| ||||||||||||||||  ||||||||    
T  12990587 atatttcttcagagttaccgtcaagtaaagattttgagtaactagtatgaaagatta 12990643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 33493428 - 33493299
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || ||||||||||||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  33493428 ctaatttggagaagagtatggagatatatcatatctttctacaaagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 33493329  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  33493328 tcgtctcatatataattgtctttatgaggg 33493299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 15716291 - 15716532
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  15716291 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 15716390  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  15716391 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 15716490  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  15716491 ggtttttaacgaggcagattataacacaaaaggatgttgtac 15716532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 16168432 - 16168553
Alignment:
Q  31 aatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttc 130  Q
    |||||||||||||| ||||||||| |||| || |||||||| ||||| || ||||||||| |||||  ||||||| | ||||||||| ||||| ||| ||    
T  16168432 aatttggagaagagcatggagatataccatatctttctacatagtcatcgtcaagtaaagattttggataactagcataaaagattatttgactttcctc 16168531  T
Q  131 atctcgtatataattgtcttta 152  Q
     |||| |||||| |||||||||    
T  16168532 gtctcatatatatttgtcttta 16168553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 27163670 - 27163565
Alignment:
Q  47 tggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattg 146  Q
    ||||||||||||| || ||||||||||||||||| ||||||||  ||||||||||||| || |||| |||| ||||| ||||||   || ||||||||||    
T  27163670 tggagataaaccagatctttctacaaagtcaccgtcaagtaaaacttttgagtaactaatataaaatattatttgaccttcttcgcgtcatatataattg 27163571  T
Q  147 tcttta 152  Q
    ||||||    
T  27163570 tcttta 27163565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 22576663 - 22576576
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatt 116  Q
    |||||||||||||||||||| ||||| | || || |||||||| |||||||||||| ||||| ||||||||||||| || ||||||||    
T  22576663 ctaatttggagaagagtatgaagatatatcatatctttctacagagtcaccgccaaataaagattttgagtaactaatataaaagatt 22576576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 145872 - 145767
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatat--ttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacatt 126  Q
    |||||||||| ||||||||| ||||||| || ||||  ||||||| ||||||||||||| |||| ||||||||||||||||  |||||||| || | |||    
T  145872 ctaatttggataagagtatgaagataaatcatatatctttctacagagtcaccgccaagcaaagattttgagtaactagtatgaaagattatttaaaatt 145773  T
Q  127 cttcat 132  Q
    ||||||    
T  145772 cttcat 145767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 15552541 - 15552625
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaag 113  Q
    |||||||||||||| ||||||||||| | || || |||||||| |||||||||||||||||| ||||||| ||| |||| |||||    
T  15552541 ctaatttggagaagggtatggagatagatcatatctttctacagagtcaccgccaagtaaagattttgagcaaccagtataaaag 15552625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 26028366 - 26028454
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    ||||||||||||||| ||| |||||| | || || |||||||| || ||||||||||||||| ||||||||||| |||| |||||||||    
T  26028366 ctaatttggagaagaatatagagatagatcatatctttctacagagccaccgccaagtaaagattttgagtaacaagtataaaagatta 26028454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 31093445 - 31093313
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  31093445 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 31093349  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  31093348 ctttcttcgtctcatagatgattgtctttatgaggg 31093313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 49625042 - 49624981
Alignment:
Q  92 ttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttac 153  Q
    ||||||||||||||||||||| |||| ||||| |||||  |||  |||||||||||||||||    
T  49625042 ttttgagtaactagtacaaaatattatttgaccttctttgtctgatatataattgtctttac 49624981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 29547425 - 29547508
Alignment:
Q  31 aatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    ||||||||||||||||||   ||| | || || |||||||| ||| | |||||||||| | |||||||||||||||| |||||||||    
T  29547425 aatttggagaagagtatg---atatatcatatctttctacagagttatcgccaagtaaggattttgagtaactagtataaaagatta 29547508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 11442167 - 11442092
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaacta 104  Q
    ||||||||||||| |||||| ||||| | || || |||||| | |||||||||||||||||  |||| ||||||||    
T  11442167 ctaatttggagaatagtatgaagatatatcatatctttctatagagtcaccgccaagtaaatattttaagtaacta 11442092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 11659839 - 11659965
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| | |||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  11659839 gcactactaatttgaagaagactatgaatataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 11659935  T
Q  123 cattcttcatctcgtatataattgtcttta 152  Q
    | |||||| |||| || || ||||| ||||    
T  11659936 ctttcttcgtctcataaatgattgtattta 11659965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 16648090 - 16648331
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||| | ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  16648090 ctaatttggagaagagtatggagatatatcatatatttctacagagtcactgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 16648189  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  16648190 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 16648289  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  16648290 ggtttttaacgaggcagattataacacaaaaggatgttgtac 16648331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 17622451 - 17622692
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||| | ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  17622451 ctaatttggagaagagtatggagatatatcatatatttctacagagtcactgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 17622550  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  17622551 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 17622650  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  17622651 ggtttttaacgaggcagattataacacaaaaggatgttgtac 17622692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 32148144 - 32148385
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  32148144 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 32148243  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  32148244 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 32148343  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  32148344 ggtttttaacgaggcagattataacacaaaaggatgttgtac 32148385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 25498722 - 25498851
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||  |||||||||||||||||||||||| | ||||||||  || |  ||||    
T  25498722 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccatcaagtaaagtttttgagtaactagcataaaagattgtttaaacttct 25498821  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  25498822 tcgtctcatatataattgtctttatgaggg 25498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 42208575 - 42208704
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  42208575 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 42208674  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  42208675 tcgtctcatatataattgtctttatgaggg 42208704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 42162747 - 42162506
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||| ||| | || || |||||||| |||||||| ||||||||| |||||||||||| | | ||||||||  || |  ||||    
T  42162747 ctaatttggagaagagtatggaaatatatcacatctttctacagagtcaccgtcaagtaaagattttgagtaacttgcataaaagattgtttaaacttct 42162648  T
Q  129 tcatctcgtatataattgtctttacgagggag-----ataatgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| |     | |||||||||| |||       ||||||||||| |||||||| |||||| |||||||| |||    
T  42162647 tcgtctcatatataattgtctttatgagggggagacaaaaatgtgttctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaa 42162548  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  42162547 ggtttttaacgaggcagattataacacaaaaggatgttgtac 42162506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 571176 - 571057
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  571176 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 571077  T
Q  129 tcatctcgtatataattgtc 148  Q
    || |||| ||||||||||||    
T  571076 tcgtctcatatataattgtc 571057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 20124945 - 20125033
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||| ||||||||||| | || || |||||||| | |||||||||||||||| ||||||||||| |||| |||||||||    
T  20124945 ctaatttggagaagggtatggagatagatcatatctttctacagaatcaccgccaagtaaagattttgagtaaccagtataaaagatta 20125033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 7578205 - 7578290
Alignment:
Q  32 atttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    ||||||| ||||||| ||||||||| || || ||| |||| ||| |||||||||||||| ||||||||||||||||  ||||||||    
T  7578205 atttggacaagagtacggagataaatcatatctttatacagagttaccgccaagtaaagattttgagtaactagtatgaaagatta 7578290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 340791 - 340659
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  340791 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 340695  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  340694 ctttcttcgtctcatagatgattgtctttatgaggg 340659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 8247771 - 8247903
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  8247771 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 8247867  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  8247868 ctttcttcgtctcatagatgattgtctttatgaggg 8247903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 34326124 - 34326203
Alignment:
Q  186 cttaaccatagttttatctcattggatttttctgataa-gtttttaataaggttgattatcacataataggatgttgtac 264  Q
    ||||||||||||||||||| | ||| |||||||||||| ||||||||| |||  |||||| ||| || ||||||||||||    
T  34326124 cttaaccatagttttatcttactgggtttttctgataaggtttttaatgaggcagattatgacacaaaaggatgttgtac 34326203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 34325976 - 34326062
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    ||||||| |||||||||||||||||| | || || |||||| |  ||||||| ||||||||| ||||||||||| |||| |||| ||||    
T  34325976 ctaattttgagaagagtatggagatagatcatatctttctaga--gtcaccgtcaagtaaagattttgagtaaccagtataaaaaatta 34326062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 26457334 - 26457244
Alignment:
Q  32 atttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||||||||||  |||||||||||| || |||| ||| |||||||| ||| |||||||| |||| | ||||||| | | |||| |||||||    
T  26457334 atttggagaaggatatggagataaatcagatatctcttcaaagtcatcgcaaagtaaagcttttcattaactagaatagaagactaattga 26457244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 20125094 - 20125175
Alignment:
Q  184 cccttaaccatagttttatctcattggatttttctgataa-gtttttaataaggttgattatcacataataggatgttgtac 264  Q
    ||||||||||| |||||||| || ||| |||| ||||||| ||||||||| |||  |||||| ||| || ||||||||||||    
T  20125094 cccttaaccatggttttatcccactgggttttcctgataaggtttttaatcaggcagattataacacaaaaggatgttgtac 20125175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 28367473 - 28367232
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  28367473 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 28367374  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  28367373 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 28367274  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  28367273 ggtttttaacgaggcagattataacacaaaaggatgttgtac 28367232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 30958089 - 30957848
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    ||||||||||||||||| |||||||| | || || |||||||| |||||||  ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  30958089 ctaatttggagaagagtttggagatatatcatatctttctacagagtcaccatcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 30957990  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     |||||||||||||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  30957989 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctacactctttttcccttaaccatggttttatcccattgggttttcctggtaa 30957890  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  30957889 ggtttttaacgaggcagattataacacaaaaggatgttgtac 30957848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 19780495 - 19780402
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||||||||||||||||||||||||| |  | || |||||||| |||||||||||||||||| ||||||| |||||||| ||||||||| ||||    
T  19780495 ctaatttggagaagagtatggagatagataatatctttctacagagtcaccgccaagtaaagattttgagcaactagtataaaagattatttga 19780402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 18080434 - 18080346
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||| ||||| | || || |||||||| ||||||| |||||||||| |||||||||||||||| |||||||||    
T  18080434 ctaatttggagaagagtatgaagatagatcatatctttctacagagtcaccaccaagtaaagattttgagtaactagtataaaagatta 18080346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 16673170 - 16673302
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| ||| || |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| |||||  |||| ||||    
T  16673170 gcactactaatttgaagatgactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaacaaat-attatttga 16673266  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | ||||||||||| || || |||||||||| |||||    
T  16673267 ctttcttcatctcatagatgattgtctttatgaggg 16673302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 35265038 - 35264906
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  35265038 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 35264942  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  35264941 ctttcttcgtctcatagatgattgtctttatgaggg 35264906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 17945415 - 17945544
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||| ||||||||||| ||||||||| |||| || |||||||| |||||||| ||||||||| |||||   ||| |  | ||||||||| ||||| |||     
T  17945415 ctaaattggagaagagcatggagatataccatatctttctacatagtcaccgtcaagtaaaggttttggacaaccaacataaaagattatttgactttca 17945514  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    ||  ||| || ||||||||||||| |||||    
T  17945515 tcggctcatacataattgtctttatgaggg 17945544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 23053876 - 23053744
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| ||| || |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  23053876 gcactactaatttgaagatgactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 23053780  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  23053779 ctttcttcgtctcatagatgattgtctttatgaggg 23053744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 24111038 - 24111128
Alignment:
Q  68 tacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacgaggg 158  Q
    |||| ||||||||| | |||||| ||||||||||||||||  ||| |||| ||||| ||||||||||| | || |  ||||||||||||||    
T  24111038 tacagagtcaccgctatgtaaagattttgagtaactagtatgaaacattatttgactttcttcatctcatgtacatctgtctttacgaggg 24111128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 9362428 - 9362493
Alignment:
Q  30 taatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagttttt 95  Q
    |||||||||||| ||| |||||||||| || |||||||||   ||||||||||| |||||||||||    
T  9362428 taatttggagaaaagtgtggagataaatcatatatttctaggcagtcaccgccatgtaaagttttt 9362493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 19780347 - 19780267
Alignment:
Q  184 cccttaaccatagttttatctcattggatttttctgataa-gtttttaataaggttgattatcacataataggatgttgta 263  Q
    ||||||||||| |||||||| ||||||||||||||| ||| ||||||||  |||  |||||| ||| || |||||||||||    
T  19780347 cccttaaccatggttttatcccattggatttttctggtaaggtttttaacgaggcagattatgacacaaaaggatgttgta 19780267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 19699056 - 19699109
Alignment:
Q  64 tttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||| |||||||||||||||||| ||||||  ||| |||| |||||||||    
T  19699056 tttctacagagtcaccgccaagtaaagattttgataaaccagtataaaagatta 19699109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 34648422 - 34648346
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactag 105  Q
    |||| ||| |||||| |||  |||||||||| || | ||| ||||||||||| ||| ||||| ||||||||||||||    
T  34648422 ctaacttgaagaagactataaagataaaccagatctctcttcaaagtcaccgtcaaataaagcttttgagtaactag 34648346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 53529362 - 53529476
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||||| || |||||| ||  |||  ||||    
T  53529362 ctaatttggagaagagtatggagataaatcatatatttctacaaagtcaccgccaagtaaggattttgagtaactaatataaaaga-tatatgaacttct 53529460  T
Q  129 tcatctcgtatataat 144  Q
    || |||||||||||||    
T  53529461 tcttctcgtatataat 53529476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 20193084 - 20192955
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  20193084 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 20192985  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  20192984 tcgtctcatatataattgtctttatgaggg 20192955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 6161916 - 6162157
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    ||||||||||||||||||| |||||| | || || |||||||| |||||||| ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  6161916 ctaatttggagaagagtatagagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 6162015  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    || |||| |||||||||||||||| ||||| || |     ||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  6162016 tcgtctcatatataattgtctttatgagggggagacaaagatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 6162115  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  6162116 ggtttttaacgaggcagattataacacaaaaggatgttgtac 6162157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 53981762 - 53982003
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||||||| | || || |||||||| |||||||| ||||||||| |||||||||||| | | ||||||||  || |  ||||    
T  53981762 ctaatttggagaagagtatggagatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaacttgcataaaagattgtttaaacttct 53981861  T
Q  129 tcatctcgtatataattgtctttacgagggag-----ataatgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttctgataa 223  Q
    |  |||| |||||||||||||||| ||||| |     | |||||||||| |||       ||||||||||| |||||||| |||||| |||| ||| |||    
T  53981862 ttgtctcatatataattgtctttatgagggggagacaaaaatgtgttctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaa 53981961  T
Q  224 -gtttttaataaggttgattatcacataataggatgttgtac 264  Q
     ||||||||  |||  |||||| ||| || ||||||||||||    
T  53981962 ggtttttaacgaggcagattataacacaaaaggatgttgtac 53982003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 2924394 - 2924306
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||||||||| | || ||||||||||| |||||||||||||||||| |||||| |||| | || |||||||||    
T  2924394 ctaatttggagaagagtatggagatatatcatatatttctacagagtcaccgccaagtaaagattttgaataaccaatataaaagatta 2924306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 22748564 - 22748652
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||||||||| | || || |||||||  |||||||||||||||||| ||||||||||| |||| |||||||||    
T  22748564 ctaatttggagaagagtatggagatagatcatatttttctactgagtcaccgccaagtaaagattttgagtaaccagtataaaagatta 22748652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 26057928 - 26057801
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaacta--gtacaaaagattaattgacatt 126  Q
    |||||||||||||||||||   |||||||||  | ||||||||||| ||| | ||||||||  |||||| ||||||  |||| |||||||| ||||| ||    
T  26057928 ctaatttggagaagagtataatgataaaccatttctttctacaaagacactgtcaagtaaatcttttgaataactatagtacgaaagattatttgacctt 26057829  T
Q  127 cttcatctcgtatataattgtctttacg 154  Q
    |||| |||| ||||||||||| ||||||    
T  26057828 cttcgtctcatatataattgtttttacg 26057801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 12747052 - 12746977
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaacta 104  Q
    ||||||||||||| |||||| ||||| | || || |||||||| |||||||||||||||||| |||||||||||||    
T  12747052 ctaatttggagaaaagtatgaagatatatcatatctttctacagagtcaccgccaagtaaagattttgagtaacta 12746977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 25691691 - 25691559
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  25691691 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 25691595  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| ||||| |||||||||| |||||    
T  25691594 ctttcttcgtctcatatatgattgtctttatgaggg 25691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 19570187 - 19570295
Alignment:
Q  44 gtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataa 143  Q
    ||||||||||| | || || |||||||| ||||| || ||||||||| ||||  |||||||||| || |||||| ||||| |||||| || | |||||||    
T  19570187 gtatggagatagatcatatctttctacatagtcatcgtcaagtaaagatttttcgtaactagtataagagattatttgaccttcttcgtcacatatataa 19570286  T
Q  144 ttgtcttta 152  Q
    |||||||||    
T  19570287 ttgtcttta 19570295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 13999708 - 13999791
Alignment:
Q  75 tcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttcatctcgtatataattgtctttacgaggg 158  Q
    |||||||||||||||| |||||||| |  |||| ||||||||| ||||| |||||| |||| ||||| |||||||||| |||||    
T  13999708 tcaccgccaagtaaagattttgagtgatcagtataaaagattatttgactttcttcgtctcatatatgattgtctttatgaggg 13999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 23193748 - 23193880
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  23193748 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 23193844  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  23193845 ctttcttcgtctcatagatgattgtctttatgaggg 23193880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 30674197 - 30674065
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  30674197 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 30674101  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  30674100 ctttcttcgtctcatagatgattgtctttatgaggg 30674065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 26996840 - 26996907
Alignment:
Q  31 aatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgag 98  Q
    |||||||||||||||||||||||| |  | || |||||||| | |||||||||||||||| |||||||    
T  26996840 aatttggagaagagtatggagatagataatatctttctacagaatcaccgccaagtaaagattttgag 26996907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 2924245 - 2924165
Alignment:
Q  185 ccttaaccatagttttatctcattggatttttctgataa-gtttttaataaggttgattatcacataataggatgttgtac 264  Q
    ||||||||||||||||||| || ||| |||| ||| ||| ||||||||| |||  |||||| ||| || ||||||||||||    
T  2924245 ccttaaccatagttttatcccactgggttttcctggtaaggtttttaatgaggcagattatgacacaaaaggatgttgtac 2924165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 34191876 - 34191748
Alignment:
Q  30 taatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattctt 129  Q
    |||||||||||||||  |||||||| | ||||| |||||| | |||||||| ||||||||| ||||| |||||||| | ||| ||||  ||||| |||||    
T  34191876 taatttggagaagagcgtggagatatatcaaatctttctatatagtcaccgtcaagtaaagattttgggtaactagcataaatgattttttgactttctt 34191777  T
Q  130 catctcgtatataattgtctttacgaggg 158  Q
    | |||| ||||||||||||||||||||||    
T  34191776 cttctcatatataattgtctttacgaggg 34191748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 41048526 - 41048767
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||||||| ||| | || || |||||||| |||||||| ||||||||| |||||||||||| | | ||||||||  || |  ||||    
T  41048526 ctaatttggagaagagtatggaaatatatcatatctttctacagagtcaccgtcaagtaaagattttgagtaacttgcataaaagattttttaaacttct 41048625  T
Q  129 tcatctcgtatataattgtctttacgagggagata-----atgtgttctacacnnnnnnncccttaaccatagttttatctcattggatttttct-gata 222  Q
    || |||| |||||||||||||||| ||||| || |     |||||||||  ||       ||||||||||| |||||||| |||||| |||| || || |    
T  41048626 tcgtctcatatataattgtctttatgagggggagacaaatatgtgttctttactttttttcccttaaccatggttttatcccattgggttttcctggaaa 41048725  T
Q  223 agtttttaataaggttgattatcacataataggatgttgtac 264  Q
     |||||||||||||  |||||| ||| || ||||||||||||    
T  41048726 ggtttttaataaggcagattataacacaaaaggatgttgtac 41048767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 10738647 - 10738735
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||| | ||| | || |  |||||||| ||||||||||||||||| |||||||||||| |||| |||||||||    
T  10738647 ctaatttggagaagagtatgaaaatagatcatacctttctacagagtcaccgccaagtaaaatttttgagtaaccagtataaaagatta 10738735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 23429211 - 23429299
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    |||||||||||||||||||| ||||| | || || ||| |||| |||||||||||||||||| ||||||||||| | || |||||||||    
T  23429211 ctaatttggagaagagtatgaagatagatcatatctttttacagagtcaccgccaagtaaagattttgagtaaccaatataaaagatta 23429299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 30714714 - 30714582
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  30714714 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 30714618  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| ||||| |||||||||| |||||    
T  30714617 ctttcttcgtctcatatatgattgtctttatgaggg 30714582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 8509449 - 8509578
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||| ||||||||||||||||||||||| || ||  || |||| |||||||   |||||||| ||||| |||||||| | ||||||||| ||||| ||||    
T  8509449 ctaaattggagaagagtatggagataaatcatatcattttacatagtcaccttgaagtaaagattttgggtaactagcataaaagattatttgaccttct 8509548  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||   |||||||||| |||| |||||    
T  8509549 tcgtctaacatataattgtttttatgaggg 8509578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 17909411 - 17909540
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||| |||||||||  ||| || ||| |||| |||||||| ||||||||| |||||   ||| || | ||||||||| |||||  ||     
T  17909411 ctaatttggagaagagcatggagatatgccatatctttttacatagtcaccgtcaagtaaaggttttggacaaccagcataaaagattatttgactgtca 17909510  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    || |||| |||||||||||||||| |||||    
T  17909511 tcgtctcatatataattgtctttatgaggg 17909540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 30722491 - 30722359
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||  ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  30722491 gcactactaatttgaagaagactatgaagataaacccgatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 30722395  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| ||||| |||||||||| |||||    
T  30722394 ctttcttcgtctcatatatgattgtctttatgaggg 30722359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 16846190 - 16846059
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattg-acattc 127  Q
    |||||||| ||||||||||| ||||||| || || |||||||| ||||| ||| || ||||| |||||||||||  ||| ||| ||||| ||| |  ||     
T  16846190 ctaatttgaagaagagtatgaagataaatcatatttttctacagagtcatcgctaaataaagattttgagtaaccggtataaatgattatttgaattttt 16846091  T
Q  128 ttcatctcgtatataattgtctttacgagggaga 161  Q
    ||| ||||  ||||||||||||||| ||||||||    
T  16846090 ttcgtctc--atataattgtctttatgagggaga 16846059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 32722495 - 32722566
Alignment:
Q  30 taatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaa 101  Q
    |||||||||||||||| || ||||| |||  || |||||||||||||| || ||| |||| |||||||||||    
T  32722495 taatttggagaagagtgtgaagatagaccggatctttctacaaagtcatcgtcaaataaattttttgagtaa 32722566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 6932706 - 6932835
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||||| ||||||| | || || |||||||| |||||| ||||||||||| |||||||||||||||| ||| ||||| || |  ||||    
T  6932706 ctaatttggagaagagtacggagatagatcatatctttctacagagtcacggccaagtaaagattttgagtaactagtataaatgattatttaaacttct 6932805  T
Q  129 tcatctcgtatataattgtctttacgaggg 158  Q
    |  |||| |||||| ||||||||| |||||    
T  6932806 tggtctcatatatagttgtctttatgaggg 6932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 17270681 - 17270560
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    |||||||||||||||| ||||||||| |||| || |||||||| |||||||| ||||||||| |||||  |||| |  | ||||||||| ||||| |||     
T  17270681 ctaatttggagaagagcatggagatataccatatctttctacatagtcaccgtcaagtaaaggttttggataaccaacataaaagattatttgactttca 17270582  T
Q  129 tcatctcgtatataattgtctt 150  Q
    || |||| ||||||||||||||    
T  17270581 tcctctcatatataattgtctt 17270560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 25397594 - 25397682
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagatta 117  Q
    ||||||||||||| |||||||||||| | || || |||||||  |||||||||||||||||| ||||||||||||||||  ||||||||    
T  25397594 ctaatttggagaaaagtatggagatagatcatatctttctactgagtcaccgccaagtaaagattttgagtaactagtatgaaagatta 25397682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 19441618 - 19441519
Alignment:
Q  31 aatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattcttc 130  Q
    |||||||||||||||||| ||||| | || || |||||||| ||||| |||||||||||| ||||||||||||  || ||||||||| || | |||||||    
T  19441618 aatttggagaagagtatgaagatagatcatatttttctacagagtcatcgccaagtaaagattttgagtaact--tataaaagattatttaaaattcttc 19441521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 13082 - 12959
Alignment:
Q  29 ctaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattgacattct 128  Q
    ||||||||||||||||||||| |||| |  | || |||||||| |||||| | ||||||||| |||||||||||||| | ||||||||  || |  ||||    
T  13082 ctaatttggagaagagtatggggatatattatatctttctacagagtcactgtcaagtaaagattttgagtaactagcataaaagattgtttaaacttct 12983  T
Q  129 tcatctcgtatataattgtcttta 152  Q
    || |||| ||||||||| ||||||    
T  12982 tcgtctcatatataattttcttta 12959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 111536 - 111668
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||| |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| |||| ||||    
T  111536 gcactactaatttgaagaagactatgaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatattatttga 111632  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| || || |||||||||| |||||    
T  111633 ctttcttcgtctcatagatgattgtctttatgaggg 111668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 19535 - 19609
Alignment:
Q  30 taatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaacta 104  Q
    |||||||||||| |||| | ||||| | || || ||||||||||||||||||||| ||||| |||||||||||||    
T  19535 taatttggagaaaagtacgaagatatatcatatttttctacaaagtcaccgccaattaaagattttgagtaacta 19609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 29703 - 29777
Alignment:
Q  30 taatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaacta 104  Q
    |||||||||||| |||| | ||||| | || || ||||||||||||||||||||| ||||| |||||||||||||    
T  29703 taatttggagaaaagtacgaagatatatcatatttttctacaaagtcaccgccaattaaagattttgagtaacta 29777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 13687 - 13819
Alignment:
Q  23 gcacaactaatttggagaagagtatggagataaaccaaatatttctacaaagtcaccgccaagtaaagtttttgagtaactagtacaaaagattaattga 122  Q
    |||| ||||||||| |||||| |||  |||||||||| ||||||| |||||||| | || ||||||| |||| |||||||||| || ||| | || ||||    
T  13687 gcactactaatttgaagaagactataaagataaaccagatatttcaacaaagtcgctgc-aagtaaactttt-gagtaactagaac-aaatactatttga 13783  T
Q  123 cattcttcatctcgtatataattgtctttacgaggg 158  Q
    | |||||| |||| ||||| |||||||||| |||||    
T  13784 ctttcttcgtctcatatatgattgtctttatgaggg 13819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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