View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19469_low_13 (Length: 213)
Name: NF19469_low_13
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_low_13 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 12410372 - 12410574
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12410372 |
tgcggcatgatagaagaggcaaaacacttattcatctcttgtgatttttttggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
12410471 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12410472 |
ttccggaaaatgtgttagaccatttatatcaatttggcatctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgt |
12410571 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
12410572 |
gtg |
12410574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 12422432 - 12422634
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12422432 |
tgcggcatgatagaagaggcaaaacacttattcatctcttgtgatttttttggcaaactttggtatggcatttctcaatggctgggttaccaattagtgc |
12422531 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12422532 |
ttccggaaaatgtgttagaccatttatatcaatttggcaacattagcagcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgt |
12422631 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
12422632 |
gtg |
12422634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 37647550 - 37647752
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
37647550 |
tgcggcatgatcgaagatgcaaaacacttattcatctcttgtgatttttttggcaaactttggtatgacatttctcactagcttggttaccaattagtgc |
37647649 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
37647650 |
ttccggaaaatgtgttagaccatttatatcaatttggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcctgtgt |
37647749 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
37647750 |
gtg |
37647752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 6764063 - 6764207
Alignment:
| Q |
59 |
tttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaa |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6764063 |
tttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatttggcacctttagcggcttctctaa |
6764162 |
T |
|
| Q |
159 |
cagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6764163 |
cagcaaacgctcaactcttaatcttatttggctatcttgtgtgtg |
6764207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27271233 - 27271435
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27271233 |
tgcggcatgatagaagatgcaaaacacttattcctctcttgtgatttttttggcaaactttagtatggcatttctcactggcttggttaccaattagtgt |
27271332 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|| | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
27271333 |
tttctgaaaatgtgtcagaccatttatatcaatttggcacctttagcggcttttctaacagcaaacgctcagctcttaatcttatttgcctaacttgtgt |
27271432 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
27271433 |
gtg |
27271435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 11031421 - 11031565
Alignment:
| Q |
59 |
tttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaa |
158 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | ||||| | || ||||| |||| ||| ||||||||||||| ||||||||||||||| || || || |
|
|
| T |
11031421 |
tttggtatggtatttctcactggcttggttataacatagtgttccctgaaaacgtgtcagatcatttatatcaatttggcacctttagcggtttttcaaa |
11031520 |
T |
|
| Q |
159 |
cagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| ||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
11031521 |
caacaaacactcagctcttaaccttatttggctatcatgtgtgtg |
11031565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 29739703 - 29739826
Alignment:
| Q |
16 |
gatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgt |
115 |
Q |
| |
|
|||||||| ||||||||| | |||||||| || ||||||||||| || |||||||| ||||| ||||||| ||||| |||| ||| ||||| |
|
|
| T |
29739703 |
gatgcaaaacacttattcctttcttgtgatttttttggtaaactttggtacggtatttctcattggcttagttaccacatagtgtttcctgaacatgtgc |
29739802 |
T |
|
| Q |
116 |
tagaccatttatatcaatatggca |
139 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
29739803 |
cagaccatttatatcaatttggca |
29739826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 19020980 - 19021177
Alignment:
| Q |
6 |
catgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccg |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19020980 |
catgatagaagatgcaaaacacttattcatctcttgtgatttttttggcaaactttggtatggcatttctcactggcttggttaccaattagtgcttccg |
19021079 |
T |
|
| Q |
106 |
gaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19021080 |
gaaaatgtgttagaccatttatatcaatttggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtg |
19021177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 22639144 - 22639346
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
22639144 |
tgcggcatgatagaagatgcaaaacatttattcctctcttgtgatttttttggcaaactttggtatgacatttcttactggcttggttaccaattagtgt |
22639243 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
22639244 |
ttccggaaaatgtgttagaccatttatatcaatttgccacctttagcggcttctctaacagcaaacgctcttctcttaatcttatttggctatcttgtgt |
22639343 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
22639344 |
gtg |
22639346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 22580905 - 22580722
Alignment:
| Q |
13 |
gaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatg |
112 |
Q |
| |
|
||||||||||||||||||||| |||| |||| || |||||||||| || ||||||||||||| ||||||| |||| |||| ||| ||| |
|
|
| T |
22580905 |
gaagatgcaaagcacttattcctctc--gtgatttttttggtaaactttggtgcggtatttctcactggcctagttaccatagagtgtttcctgaacatg |
22580808 |
T |
|
| Q |
113 |
tgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgt |
198 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||| |||||||||| || |||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
22580807 |
tgctagcccatttatatcaatttggcaccttaggcggcttctccaaacgcaaccgctcaacttttaatcttatatggctatcttgt |
22580722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 26369406 - 26369258
Alignment:
| Q |
55 |
aaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttct |
154 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||| ||||| |||| ||| ||||| ||||||||| || ||| ||||||||| | ||||||| |
|
|
| T |
26369406 |
aaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttgcattaatttggcaccttaggaggcttct |
26369307 |
T |
|
| Q |
155 |
ctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| || | ||| ||||| ||| || ||||||| ||| |||||||| |||| |
|
|
| T |
26369306 |
caaaaaacaatcgctccacttttcatcttatatggttatcttgtgtgtg |
26369258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 40973793 - 40973594
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| | ||||| ||||| |||||||| |||||||||| || ||||| |||||||| ||||||||||| || | | ||| ||||| ||| |
|
|
| T |
40973793 |
ggcatgctggaagacgcaaaacacttatttttctcttgtgatttctttggtaaactgtggtatggtatttctcactgacttaggttccacatagtgtttc |
40973694 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| ||| |||||| ||| ||||| ||||||| ||||||||| | || || || || ||||| |||||| || ||||||| || ||||| |||||| |||| |
|
|
| T |
40973693 |
ctgaacatgtgtcagatcatttgtatcaatttggcaccttaggtgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtg |
40973594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 24503639 - 24503841
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24503639 |
tgcggcatgatagaagatgcaaaacacttattcatctcttgtgatttttttggcaaactttggtatggcatttctcattggctgggttaccaattagtgc |
24503738 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24503739 |
ttccggaaaatgtgttagaccatttatatcaatttggcatctttagctgcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgt |
24503838 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
24503839 |
gtg |
24503841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 8444773 - 8444573
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnng-gcaaactttggtatggcatttctcactggctgggttaccaattagtgctt |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||| || |
|
|
| T |
8444773 |
ggcatgatagaagatgcaaaacacttattcctctcttgtgatttttttttgcaaactttggtatgacatttctcactggcttggttacgaattagtgttt |
8444674 |
T |
|
| Q |
103 |
ccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8444673 |
tcggaaaatgtgttagaccatttatatcaatttggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgt |
8444574 |
T |
|
| Q |
203 |
g |
203 |
Q |
| |
|
| |
|
|
| T |
8444573 |
g |
8444573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45539900 - 45540102
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
45539900 |
tgcggcatgatagaagatgaaaaacacttattcctctcttgtgatttttttggcaaactttggtatggtatttctcactggcttggttaccacttagtat |
45539999 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|||| |||||||||| ||| || |||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||||||||| ||||||||| | |
|
|
| T |
45540000 |
ttcctgaaaatgtgtgagatcacttatatcaatttggcacctgtaacggcttctctaacaacaaactctcaactcttaatcttatttgtctatcttgtgt |
45540099 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
45540100 |
gtg |
45540102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 13090294 - 13090100
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaa |
108 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| || || ||||||||||| |||||| ||||||| ||||| | ||||| | || ||| |
|
|
| T |
13090294 |
gatagaagatgcaaaacacttattcctctcttgtgatttttttggaaagctttggtatggtatttctaactggcttggttataacatagtgttccctgaa |
13090195 |
T |
|
| Q |
109 |
aatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| |||| ||||||||||||||||| || |||||||| ||| || || |||| ||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
13090194 |
aacgtgtcagaccatttatatcaatttgacacctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtg |
13090100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 4034808 - 4034614
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaa |
108 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||| || || ||||||||||| |||||| ||||||| ||||| | ||||| | || ||| |
|
|
| T |
4034808 |
gatagaagatgcgaaacacttattcctctcttgtgatttttttggaaagctttggtatggtatttctaactggcttggttataacatagtgttccctgaa |
4034709 |
T |
|
| Q |
109 |
aatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| |||| || |||||||||||||| ||||||||||| ||| || || |||| ||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
4034708 |
aacgtgtcaggccatttatatcaatttggcacctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtg |
4034614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 9932567 - 9932419
Alignment:
| Q |
55 |
aaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttct |
154 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||| ||||| |||| ||| ||||| ||||||||| ||| ||| ||||||||| | ||||||| |
|
|
| T |
9932567 |
aaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttttattaatttggcaccttaggaggcttct |
9932468 |
T |
|
| Q |
155 |
ctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| || | ||| ||||| || || ||||||| ||| |||||||| |||| |
|
|
| T |
9932467 |
caaaaaacaatcgctccgcttttcatcttatatggttatcttgtgtgtg |
9932419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 43498882 - 43499084
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43498882 |
tgcggcatgatagaagatgcaaaacacttattcatctcttgtgatttttttggcaaactttggtatggcatttatcactggctgggttaccaattagtgc |
43498981 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
43498982 |
ttccggaaaatgtgttagaccatttatatcaatttggcacctttagcggcttctctaatagcaaacgctcaacacttaatcttatttggctatcttgtgt |
43499081 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
43499082 |
gtg |
43499084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 7743157 - 7743353
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
7743157 |
tgcggtatgatagaagatgtaaaacacttattcatctcttgtgatttttttggcaaactttggtatgacatttctcattggctgggttaccaattagtgc |
7743256 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttg |
197 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7743257 |
ttctggaaaatgtgttagaccatttatatcaatttggcacctttaacggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttg |
7743353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 42718174 - 42718357
Alignment:
| Q |
20 |
caaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttaga |
119 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42718174 |
caaaacacttattcatctcttgtgatttttttggcaaactttggtatggcatttctcattggctgggttatcaattagtgcttccggaaaatgtgttaga |
42718273 |
T |
|
| Q |
120 |
ccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42718274 |
ccatttatatcaatttggcacctttagcggcttttctaacaacaaacgctcaactcttaatcttatttggctatcttgtgtgtg |
42718357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 36652205 - 36652054
Alignment:
| Q |
52 |
ggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggct |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36652205 |
ggcaaactttggtatgacatttctcactggcttggttaccaattagtgtttccggaaaatgtgttagaccatttatatcaatttggcacctttagcggct |
36652106 |
T |
|
| Q |
152 |
tctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36652105 |
tctctaacagcaaacactcaactcttaatcttatttggctatcttgtgtgtg |
36652054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9897020 - 9896819
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
9897020 |
tgcggcatgatagaagatgcaaaacacttattcctctcttgt-aattttttggcaaactttggtatggtatttctcactggcttggttaccacttagtgt |
9896922 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||| |||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||| | |
|
|
| T |
9896921 |
ttcctgaaaatgtgtcagatcatttatatcaatttggcacctttagtggcttctctaacggcaaacgctaatctcttaatcttatttggctatcttgtgt |
9896822 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
9896821 |
gtg |
9896819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 39060233 - 39060034
Alignment:
| Q |
3 |
cggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgctt |
102 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||| || |
|
|
| T |
39060233 |
cggcatgataga-gatgcaaaacacttattcctctcttgtgatttttttggcaaactttggtatggtatttctcattggcttggttaccacttagtgttt |
39060135 |
T |
|
| Q |
103 |
ccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgt |
202 |
Q |
| |
|
| |||||||| | ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| |
|
|
| T |
39060134 |
cttgaaaatgtatcagatcatttatatcaatttggcacctttagcggcttttctaacagcaaacgctcagctcttaatcttatttgactatcttgtgtgt |
39060035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 23108292 - 23108098
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaa |
108 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| | ||| ||||||||||| |||||||||||||| |||||| | ||||| |||| || |
|
|
| T |
23108292 |
gataaaagatgcaaagcacttattcctctcttgtgatttttttgacaagctttggtatggtatttctcactggcttggttacaacatagtgtttcctaaa |
23108193 |
T |
|
| Q |
109 |
aatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| ||| ||||||||||||| ||| ||||||||||||||| || || |||||||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
23108192 |
aacatgtcagaccatttatattaatttggcacctttagcggtttttcaaacagcaaacactcagctcttaaccttatttggctatcatgtgtgtg |
23108098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 37871166 - 37870971
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaa-ctttggtatggcatttctcactggctgggttaccaattagtgcttccgga |
107 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| | ||| ||||||||||| |||||||||||||| ||||| | ||||| | || || |
|
|
| T |
37871166 |
gatagaagatgcaaaacacttattcctctcttgtgattttttttggaaagctttggtatggtatttctcactggcttggttataacatagtgttccctga |
37871067 |
T |
|
| Q |
108 |
aaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
||| |||| ||| ||||||||||||| ||||||||||| ||| || || |||| ||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
37871066 |
aaacgtgtcagatcatttatatcaatttggcacctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtg |
37870971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 48640309 - 48640463
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||| |||||||||| || |||||||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
48640309 |
tgcggtatgatggaggatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatggtatttctcattggcttagttaccacatagtgt |
48640408 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctc |
155 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
48640409 |
ttcctgaacatgtgccagaccatttatatcaatttggcaccttaagaggcttctc |
48640463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 47590980 - 47590838
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||| |||||||||| || ||||||||||||| |||||||| ||||| ||||||| || || |
|
|
| T |
47590980 |
tgcgacatgatggaggatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatgatatttctcattggcttagttaccacataatgt |
47590881 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctt |
143 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
47590880 |
ttcctgaacatgtgccagaccatttgtatcaatttggcacctt |
47590838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 56024674 - 56024762
Alignment:
| Q |
55 |
aaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctt |
143 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||| ||||| |||| ||| || ||| ||||||||||||||| | ||||||||| |
|
|
| T |
56024674 |
aaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatttgtcagaccatttatatcattttggcacctt |
56024762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 40346298 - 40346106
Alignment:
| Q |
11 |
tagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaa |
110 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||| | ||||| ||||||| |||||||||||||| | | ||| ||||| |||| || | |
|
|
| T |
40346298 |
tagaagacgcagagcacttattcttctcttgtgatttttttgataaactgtggtatgatatttctcactggcttaggttccatatagtgtttcctaaaca |
40346199 |
T |
|
| Q |
111 |
tgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
||||| ||| ||||| ||||||| ||||||||| |||| || || || ||||| |||||| || ||||||| || ||||| |||||| |||| |
|
|
| T |
40346198 |
tgtgtcagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtg |
40346106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9162 - 9364
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
9162 |
tgcggcatgatagaagatgcaaaacatttattcctctcttgtgatttttatggcaaactttggtatgacatttctcactggcttggttaccaattagtgt |
9261 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9262 |
ttccggaaaatgtgttagaccatttatatcaatttggcacctttagcagcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgt |
9361 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
9362 |
gtg |
9364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 4532602 - 4532400
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||| ||| ||||| ||||||||||||||| |
|
|
| T |
4532602 |
tgcggcatgatagaagatgcaaaacacttattcctctcttgtgatttttttggcaaactttggtatgacatttatcagtggcttggttaccaattagtgt |
4532503 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
4532502 |
tttcggaaaatgtgttagaccatttatatcagtttgacacctttggcggcttctctaacagcaaacgctcaactcttaatcttatttgactatcttgtgt |
4532403 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
4532402 |
gtg |
4532400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 19228405 - 19228212
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaa |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||| |||||||| ||||| | ||||| | || ||| |
|
|
| T |
19228405 |
gatagaagatgcaaaacacttattcatctcttgtgatttttttggaaagctttggtatggtatttcgcactggcttggttataacatagtgttccctgaa |
19228306 |
T |
|
| Q |
109 |
aatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||||||||||||| || || |||| ||||| |||| ||||||| | |||||||||||| ||| |||| |
|
|
| T |
19228305 |
aacgtgtcagaccatttatatcaatttggcacctttagcggtttttcaaacaacaaacactcagctcttaa-cctatttggctatcatgtgtgtg |
19228212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 34548944 - 34549138
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaa |
108 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| || || ||||||||||| |||||| ||||||| ||||| | ||||| | || ||| |
|
|
| T |
34548944 |
gatagaagacgcaaaacacttattcatctcttgtgatttttttggaaagctttggtatggtatttctaactggcttggttataacatagtgttccctgaa |
34549043 |
T |
|
| Q |
109 |
aatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||| || || |||| ||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
34549044 |
aacgtgccagaccatttatatcaatttggcacctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtg |
34549138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 31912067 - 31911876
Alignment:
| Q |
8 |
tgatagaagatgcaaagcacttattcatctcttgtgannnnnnn-ggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccgg |
106 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||| ||||||||||| || || |||||||| ||||| ||||||| | ||| ||| | |
|
|
| T |
31912067 |
tgatagaagatgtaaaacacttattcctctcttgtgatttattttggcaaactttgatacggtatttctcattggcttagttaccacgttgtgtttcttg |
31911968 |
T |
|
| Q |
107 |
aaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgt |
198 |
Q |
| |
|
|| ||||| ||||||||||||||||| || ||| || ||||||||||||| ||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
31911967 |
aacatgtgccagaccatttatatcaatttgacacattatgcggcttctctaatagcaaccgctcagcttttaatcttatttggctatcttgt |
31911876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 33936135 - 33936214
Alignment:
| Q |
124 |
ttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||||||||||| | |||||||||||||||||| |||||||||| |||| |
|
|
| T |
33936135 |
ttatatcaatttggcacctttagcggtttttctaacagcaaacacacaactcttaatcttatttagctatcttgtgtgtg |
33936214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 15759539 - 15759733
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||| || ||||| |||||||| |||||||||||||| | | ||| ||||| ||| |
|
|
| T |
15759539 |
ggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttc |
15759638 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgt |
198 |
Q |
| |
|
| ||| |||||| ||| ||||| ||||||| ||||||||| |||| || || || ||||| ||||||||| ||||||| || ||||| |||||| |
|
|
| T |
15759639 |
ctgaacatgtgtcagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaaccgctcaacttttaatctcatatggctttcttgt |
15759733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33677021 - 33676819
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| |||||||||| || |||||||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
33677021 |
tgcggcatgatggaggatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatggtatttctcattggcttagttaccacatagtgt |
33676922 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||||||| ||||||| | | |||||||| || | ||| ||||| || || ||||||| ||| |||||||| | |
|
|
| T |
33676921 |
ttcctgaacatgtgccagaccatttgtatcaatttggcaccatatgaggcttctcaaaaaacaatcgctccgcttttcatcttatatggttatcttgtgt |
33676822 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
33676821 |
gtg |
33676819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 26676474 - 26676616
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||| | |||||||| ||||||||| |||||||||| || |||||||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
26676474 |
tgcggcatgatgggggatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatggtatttctcattggcttagttaccacatagtgt |
26676573 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctt |
143 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
26676574 |
ttcctgaacatgtgccagaccatttgtatcaatttggcacctt |
26676616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 52022443 - 52022611
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| ||| | |||| || ||||||||||| |||| ||||||||| ||||||| |||||| |
|
|
| T |
52022443 |
tgcggcatgctggaagatgcaaaacacttattcctctttcgtgatatttttggtaaactttggtacaatatttttcactggcttagttaccacttagtgt |
52022542 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgct |
169 |
Q |
| |
|
||| ||| || || ||||||||||||||||| ||||||||| |||||||||| || ||||| |||| |
|
|
| T |
52022543 |
ttcttgaacatatgccagaccatttatatcaatttggcaccttaggcggcttctccaaaagcaaccgct |
52022611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 46731646 - 46731787
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||| |||||||||| || ||||||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
46731646 |
tgcggtatgatggaggatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatgatatttctcattggcttagttaccacatagtgt |
46731745 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctt |
143 |
Q |
| |
|
||| | || ||||| ||||||||||||||||| | ||||||| |
|
|
| T |
46731746 |
ttctg-aacatgtgacagaccatttatatcaatttcgcacctt |
46731787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 1031814 - 1032011
Alignment:
| Q |
6 |
catgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccg |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| | ||||| |||||||||| |||||||||||||| |||||||| |||||| |||| |
|
|
| T |
1031814 |
catgatagaagatgcaaaacacttattcctctcttgtcatttttttggcaagctttggtatgatatttctcactggcttggttaccacttagtgtttcct |
1031913 |
T |
|
| Q |
106 |
gaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
||||| |||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
1031914 |
gaaaacgtgtcagatcatttatatcaatttagcacctttagcggcttctctaacaacaaacgctcaactctgaatcttatttggctatattgtgtgtg |
1032011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 9943013 - 9942915
Alignment:
| Q |
105 |
ggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
9943013 |
ggaaaatgtgttagaccatttatatcaatttggcacctttagcggcttctctgacagcaaacactcaactcttaatcttatttgactatcttgtgtgtg |
9942915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 17194396 - 17194204
Alignment:
| Q |
10 |
atagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaa |
109 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||| |||||| | ||||| |||| ||| |
|
|
| T |
17194396 |
atagaagatgcaaatcacttattcctctcttgtgatttttt-ggcaaactttggtttggtatctctcactggcttggttacaacatagtgtttcctaaaa |
17194298 |
T |
|
| Q |
110 |
atgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| || |||||||| | || || ||||||||| ||||||||| |||||||| |||| |
|
|
| T |
17194297 |
atgtgtcagaccatttatatcaacttggcacctttagcggtttttctaacagtagacacttaactcttaaccttatttggttatcttgtgtgtg |
17194204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 40858545 - 40858343
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| |||||||||| || ||||||||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
40858545 |
tgcggcatgatggaggatgcaaaacacttattcctctcttgtgatttttttggtaaactttggtatgatatttctcattggcttagttaccacatagtgt |
40858446 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|||| ||| |||||| ||||||||| ||||||| ||||||||| | |||||||| || | ||| ||||| || || ||||||| ||| |||||||| | |
|
|
| T |
40858445 |
ttcctgaacatgtgtcagaccatttgtatcaatttggcaccttaggaggcttctcaaaaaacaatcgctccgcttttcatcttatatggttatcttgtgt |
40858346 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
40858345 |
gtg |
40858343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 32575051 - 32575250
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||| || ||||| |||||||| |||||||||||||| || | ||| ||||| ||| |
|
|
| T |
32575051 |
ggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttgggttccatatagtgtttc |
32575150 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| ||| |||||| ||| ||||| ||||||| ||||||||| |||| || || || ||||| |||||| || ||||||| || ||||| |||||| |||| |
|
|
| T |
32575151 |
ctgaacatgtgtcagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaatcgctcagcttttaatctcatatggctttcttgtgtgtg |
32575250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 15669273 - 15669472
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||| || ||||| |||||||| |||||||||||||| | | ||| ||||| ||| |
|
|
| T |
15669273 |
ggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttc |
15669372 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| ||| ||||| ||| ||||| ||||||| ||||||||| |||| || || || ||||| ||||||||| ||||||| || ||||| |||||| |||| |
|
|
| T |
15669373 |
ctgaacatgtgccagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaaccgctcaacttttaatctcatatggctttcttgtgtgtg |
15669472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 29626495 - 29626694
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||| || ||||| |||||||| |||||||||||||| | | ||| ||||| ||| |
|
|
| T |
29626495 |
ggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttc |
29626594 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| ||| ||| || ||| ||||| ||||||| ||||||||| |||| || || || ||||| |||||| || ||||||| || ||||| |||||| |||| |
|
|
| T |
29626595 |
ctgaacatgggtcagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtg |
29626694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 38141821 - 38142020
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||| |||||||||| || ||||| |||||||| |||||||||||||| | | ||| ||||| ||| |
|
|
| T |
38141821 |
ggcatgttagaagacgcagaacacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttc |
38141920 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| ||| |||||| ||| ||||| ||||||| ||||||||| |||| || || || ||||| |||||| || ||||||| || ||||| |||||| |||| |
|
|
| T |
38141921 |
ctgaacatgtgtcagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtg |
38142020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 19323857 - 19324005
Alignment:
| Q |
55 |
aaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttct |
154 |
Q |
| |
|
||||| |||||||| |||||||||||||| | | ||| ||||| |||| ||| |||||| ||| ||||| ||| ||| ||||||||| |||| || | |
|
|
| T |
19323857 |
aaactgtggtatggtatttctcactggcttaggttccatatagtgtttcctgaacatgtgtcagatcatttgtatgaatttggcaccttaggcgggtttt |
19323956 |
T |
|
| Q |
155 |
ctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| || ||||| ||||||||| |||| || || ||||| |||||| |||| |
|
|
| T |
19323957 |
ccaaaagcaaccgctcaacttttaacctcatatggctttcttgtgtgtg |
19324005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 24393489 - 24393691
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| ||||||||| || |||||||||||||| ||||| |||||||| |||||| | || || |
|
|
| T |
24393489 |
tgcggtatgatagaagatgcaaaacacttattcctctcttgtgctttttttggaaaactttggtatggtatttcccactggcttggttacaacataatgt |
24393588 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtct |
200 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||| ||||| || |||||| || ||||||| ||||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
24393589 |
ttcctgaaaatgtgtcagacaatttatatcaatttggcaactatagcggtttttctaacaacaaacactccgctcttaatcttatttggctatcttgtgt |
24393688 |
T |
|
| Q |
201 |
gtg |
203 |
Q |
| |
|
||| |
|
|
| T |
24393689 |
gtg |
24393691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 12912767 - 12912573
Alignment:
| Q |
9 |
gatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaa |
108 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||| || || ||||||||||| |||||| ||||||| ||||| | ||||| | || ||| |
|
|
| T |
12912767 |
gatagaagacgcaaaacacttattcctctcttgtgatttttttggaaagctttggtatggtatttctaactggcttggttataacatagtgttccctgaa |
12912668 |
T |
|
| Q |
109 |
aatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||| || || |||| ||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
| T |
12912667 |
aacgtgccagaccatttatatcaatttggcacctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtg |
12912573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 18973140 - 18972934
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttat--tcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagt |
98 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| || |||||||||| || |||||||||||||| |||| |||||||| |||||| | |||| |
|
|
| T |
18973140 |
tgcggtatgatagaagatgcaaaacacttatattcctctcttgtgatttttttggaaaactttggtatggtattttccactggcttggttacaacatagt |
18973041 |
T |
|
| Q |
99 |
gcttccggaaaatgtgttagaccatttatat--caatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatctt |
196 |
Q |
| |
|
| ||| ||||||| || ||||||||||||| |||| ||||| || |||||| || ||||||| |||| ||| |||||||||||||||||||||||| |
|
|
| T |
18973040 |
gtttcatgaaaatgcgtcagaccatttatatatcaatttggcaactatagcggtttttctaacaacaaaaactccgctcttaatcttatttggctatctt |
18972941 |
T |
|
| Q |
197 |
gtctgtg |
203 |
Q |
| |
|
|| |||| |
|
|
| T |
18972940 |
gtgtgtg |
18972934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 6028904 - 6029047
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnn-ggcaaactttggtatggcatttctcactggctgggttaccaattagtg |
99 |
Q |
| |
|
||||| ||||| || ||||| || |||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
6028904 |
tgcggtatgatggaggatgctaaacacttattcatctcttgtgattttttttggtaaactttggtatgatatttctcactggcttagttaccacatagta |
6029003 |
T |
|
| Q |
100 |
cttccggaaaatgtgttagaccatttatatcaatatggcacctt |
143 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
6029004 |
tttcctgaacatgtgtcggaccatttatatcaatttggcacctt |
6029047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 7093504 - 7093703
Alignment:
| Q |
4 |
ggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgcttc |
103 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||| || ||||| |||||||| |||||||||||||| | | ||| ||||| || |
|
|
| T |
7093504 |
ggcatgttagaagacgcagagcacttattcttctcttgtgatttttttggtaaactgtggtatggtatttctcactggcttaggttccatatagtgtttt |
7093603 |
T |
|
| Q |
104 |
cggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| || |||||| ||| ||||| ||||||| ||||||||| |||| || || || ||||| |||||| || ||||||| || ||||| |||||| |||| |
|
|
| T |
7093604 |
ctaaacatgtgtcagatcatttgtatcaatttggcaccttaggcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtg |
7093703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23370 - 23574
Alignment:
| Q |
1 |
tgcggcatgatagaagatgcaaagcacttattcatctcttgtgannnnnnnggcaaactttggtatggcatttctcactggctgggttaccaattagtgc |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||||||| || |||||||||||||| |||| |||| ||| |||||| | ||||| |
|
|
| T |
23370 |
tgcggtatgatagaagatgcaaaacacttattcctctcttgtgatttttttggaaaactttggtatggtattttccactagcttggttacaacatagtgt |
23469 |
T |
|
| Q |
101 |
ttccggaaaatgtgttagaccatttatat--caatatggcacctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgt |
198 |
Q |
| |
|
||| ||||||| || ||||||||||||| |||| ||||| || |||||| || ||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
23470 |
ttcatgaaaatgcgtcagaccatttatatatcaatttggcaactatagcggtttttctaacaacaaaaactccgctcttaatcttatttggctatcttgt |
23569 |
T |
|
| Q |
199 |
ctgtg |
203 |
Q |
| |
|
|||| |
|
|
| T |
23570 |
gtgtg |
23574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 10436902 - 10436754
Alignment:
| Q |
55 |
aaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttct |
154 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||| ||||| |||| ||| ||||| ||||||||| ||||||| ||||||||| | ||||||| |
|
|
| T |
10436902 |
aaactttggtattgtatttctcattggcttagttaccacatagtgtttcctgaacatgtgccagaccatttgtatcaatttggcaccttaggaggcttct |
10436803 |
T |
|
| Q |
155 |
ctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| || | ||| ||||| || || ||||||| ||| |||||||| |||| |
|
|
| T |
10436802 |
caaaaaacaatcgctctgcttttcatcttatatggttatcttgtgtgtg |
10436754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 53459378 - 53459230
Alignment:
| Q |
55 |
aaactttggtatggcatttctcactggctgggttaccaattagtgcttccggaaaatgtgttagaccatttatatcaatatggcacctttagcggcttct |
154 |
Q |
| |
|
||||| ||||||| |||||||||||||| | | ||| ||||| |||| ||| |||||| ||| ||||| ||||||| || |||||| |||| || | |
|
|
| T |
53459378 |
aaactgtggtatgatatttctcactggcttaggttccatatagtgtttcctgaacatgtgtcagatcatttgtatcaatttgacaccttaggcgggtttt |
53459279 |
T |
|
| Q |
155 |
ctaacagcaaacgctcaactcttaatcttatttggctatcttgtctgtg |
203 |
Q |
| |
|
| || ||||| ||||||||| ||||||| || || || |||||| |||| |
|
|
| T |
53459278 |
ccaaaagcaaccgctcaacttttaatctcatatgactttcttgtgtgtg |
53459230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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