View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19469_low_2 (Length: 590)
Name: NF19469_low_2
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Complemental strand, 40269938 - 40269359
Alignment:
| Q |
11 |
catcatcaaccagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcattcggcggaattccaaacttccccatttggccaaaaacacc |
110 |
Q |
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| T |
40269938 |
catcatcaaccagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcattcggcggaattccaaacttccccatttggccaaaaacacc |
40269839 |
T |
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| Q |
111 |
aaatgcagctccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccacgcgatctttctccttcatcattttgtaaacccccaaagcc |
210 |
Q |
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| T |
40269838 |
aaatgcagctccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccacgcgatctttctccttcatcattttgtaaacccccaaagcc |
40269739 |
T |
|
| Q |
211 |
tcctccatgcttccacattttgcataaaaatcaattaaggaagtacctaacacagggttagacaaaaactcctcataattcatcaaacccttagcccaat |
310 |
Q |
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| T |
40269738 |
tcctccatgcttccacattttgcataaaaatcaatcaaggaagtacctaacacagggttagacaaaaactcctcataattcatcaaacccttagcccaat |
40269639 |
T |
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| Q |
311 |
ttcccaactccaacgctcccaaactcgcacatgaagagagagctcccaccatagcataacaatccggtctcacatttaccttcctcatttcaaaaaacaa |
410 |
Q |
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| T |
40269638 |
ttcccaactccaacgctcccaaactcgcacatgaagagagagctcccaccatagcataacaatccggtctcacatttaccttcctcatttcaaaaaacaa |
40269539 |
T |
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| Q |
411 |
ctcaattgcctctctaggcaacccattcgacgcatatccctgaatcatagcactccaacaaacaatatccttctcaaccattccatcaaacacaaacctc |
510 |
Q |
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| T |
40269538 |
ctcaattgcctctctaggcaacccattcgacgcataaccctgaatcatagcactccaacaaacaatatccttctcaaccattccatcaaacacaaacctc |
40269439 |
T |
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| Q |
511 |
gcctcctccatacttccacatctcgtatacatatccaccaaagaagttgccacaaaaacattcctagacaaaccacactc |
590 |
Q |
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| T |
40269438 |
gcttcctccatacttccacatttcgtatacatatccaccaaagaagttgccacaaaaacattcctagacaaaccacactc |
40269359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 40260381 - 40260050
Alignment:
| Q |
11 |
catcatcaaccagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcattcggcggaattccaaacttccccatttggccaaaaacacc |
110 |
Q |
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| T |
40260381 |
catcatcaaccagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcatttggcggaattccaaacttccccatttggccaaaaacacc |
40260282 |
T |
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| Q |
111 |
aaatgcagctccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccacgcgatctttctccttcatcattttgtaaacccccaaagcc |
210 |
Q |
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| T |
40260281 |
aaatgcagccccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccatgcgatctttctccttcatcattttgtaaacccccaaagcc |
40260182 |
T |
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| Q |
211 |
tcctccatgcttccacattttgcataaaaatcaattaaggaagtacctaacacagggttagacaaaaactcctcataattcatcaaacccttagcccaat |
310 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
40260181 |
tcctccatgcttccacatttttcataaaaatcaatcaagtaagtacccaacacagggtcagacaaaaactcctcgtaattcatcaaacctttagtccaat |
40260082 |
T |
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| Q |
311 |
ttcccaactccaacgctcccaaactcgcacat |
342 |
Q |
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| T |
40260081 |
ttcccaactccaacgctcccaaactcgcacat |
40260050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 338 - 587
Target Start/End: Complemental strand, 40258904 - 40258655
Alignment:
| Q |
338 |
cacatgaagagagagctcccaccatagcataacaatccggtctcacatttaccttcctcatttcaaaaaacaactcaattgcctctctaggcaacccatt |
437 |
Q |
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| T |
40258904 |
cacatgaagagagagctcccatcatagcataacaatccggtctcacatttaccttcctcatttcaaaaaacaactcaattgcctctctaggtaacccatt |
40258805 |
T |
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| Q |
438 |
cgacgcatatccctgaatcatagcactccaacaaacaatatccttctcaaccattccatcaaacacaaacctcgcctcctccatacttccacatctcgta |
537 |
Q |
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||||||||| |||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||| |
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| T |
40258804 |
cgacgcataaccctaaatcataacactccaacaaacaacatctttctcaaccattccatcaaacacaaatctcgcttcctccatacttccacatttagta |
40258705 |
T |
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| Q |
538 |
tacatatccaccaaagaagttgccacaaaaacattcctagacaaaccaca |
587 |
Q |
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| T |
40258704 |
tacatatccaccaaagacgtagccacaaaaacattcctagacaaaccaca |
40258655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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