View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19469_low_4 (Length: 481)

Name: NF19469_low_4
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19469_low_4
NF19469_low_4
[»] chr5 (24 HSPs)
chr5 (81-463)||(4838370-4838746)
chr5 (16-68)||(1479169-1479221)
chr5 (16-60)||(39335497-39335541)
chr5 (13-64)||(338801-338852)
chr5 (13-68)||(12914196-12914251)
chr5 (14-64)||(25017328-25017378)
chr5 (16-64)||(1759841-1759889)
chr5 (16-64)||(12068211-12068259)
chr5 (16-68)||(13951269-13951321)
chr5 (16-59)||(8410166-8410209)
chr5 (13-68)||(39693031-39693086)
chr5 (16-65)||(34546802-34546851)
chr5 (16-65)||(35945270-35945319)
chr5 (17-66)||(38610327-38610376)
chr5 (16-68)||(4421997-4422049)
chr5 (16-68)||(25568325-25568377)
chr5 (16-68)||(35653288-35653340)
chr5 (13-64)||(39069313-39069364)
chr5 (16-50)||(4962567-4962601)
chr5 (16-50)||(5151513-5151547)
chr5 (13-50)||(10163677-10163714)
chr5 (24-64)||(27823291-27823331)
chr5 (24-64)||(37243879-37243919)
chr5 (16-68)||(43414097-43414149)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-68)||(392165-392217)
[»] chr3 (26 HSPs)
chr3 (13-67)||(37509132-37509186)
chr3 (16-68)||(4759883-4759935)
chr3 (13-68)||(51817345-51817400)
chr3 (16-68)||(8715534-8715586)
chr3 (16-68)||(9067421-9067473)
chr3 (16-68)||(32415593-32415645)
chr3 (16-64)||(36730190-36730238)
chr3 (13-65)||(8847488-8847540)
chr3 (13-64)||(34060803-34060854)
chr3 (13-64)||(41345996-41346047)
chr3 (13-64)||(52570803-52570854)
chr3 (16-65)||(44570422-44570471)
chr3 (13-50)||(49976192-49976229)
chr3 (16-68)||(20227413-20227465)
chr3 (16-64)||(29915612-29915660)
chr3 (16-64)||(29964765-29964813)
chr3 (13-59)||(11316987-11317033)
chr3 (13-59)||(26850536-26850582)
chr3 (16-50)||(31647328-31647362)
chr3 (16-50)||(35306356-35306390)
chr3 (13-51)||(45899594-45899632)
chr3 (16-50)||(46317510-46317544)
chr3 (27-64)||(13647073-13647110)
chr3 (13-50)||(21324537-21324574)
chr3 (17-66)||(48861220-48861269)
chr3 (16-68)||(10854883-10854935)
[»] chr1 (35 HSPs)
chr1 (16-68)||(2125737-2125789)
chr1 (16-68)||(33929990-33930042)
chr1 (13-68)||(4940770-4940825)
chr1 (13-68)||(26469612-26469667)
chr1 (13-68)||(41147508-41147563)
chr1 (13-64)||(50295467-50295518)
chr1 (16-68)||(11386005-11386057)
chr1 (16-68)||(42607354-42607406)
chr1 (16-68)||(47655401-47655453)
chr1 (13-60)||(17402969-17403016)
chr1 (13-64)||(22346271-22346322)
chr1 (13-64)||(40845272-40845323)
chr1 (13-64)||(41898893-41898944)
chr1 (24-65)||(4656048-4656089)
chr1 (13-50)||(52396464-52396501)
chr1 (16-68)||(6170581-6170633)
chr1 (17-65)||(28850943-28850991)
chr1 (13-65)||(31975508-31975560)
chr1 (16-68)||(34874591-34874643)
chr1 (13-49)||(49508782-49508818)
chr1 (13-64)||(47895355-47895406)
chr1 (19-65)||(5945447-5945493)
chr1 (24-65)||(28277515-28277556)
chr1 (16-65)||(32213922-32213971)
chr1 (16-65)||(45721776-45721825)
chr1 (16-68)||(7190505-7190557)
chr1 (16-64)||(11385844-11385892)
chr1 (17-53)||(44043500-44043536)
chr1 (16-68)||(50154497-50154549)
chr1 (13-52)||(46296231-46296270)
chr1 (13-63)||(2496061-2496111)
chr1 (16-65)||(27209754-27209803)
chr1 (13-68)||(29966843-29966899)
chr1 (24-60)||(43433807-43433843)
chr1 (13-57)||(44286893-44286937)
[»] chr8 (21 HSPs)
chr8 (13-68)||(6433565-6433620)
chr8 (13-68)||(25249374-25249429)
chr8 (16-60)||(10694831-10694875)
chr8 (13-64)||(26892807-26892858)
chr8 (14-64)||(19389347-19389397)
chr8 (16-65)||(6939182-6939231)
chr8 (16-65)||(21016093-21016142)
chr8 (16-68)||(4989957-4990009)
chr8 (16-68)||(5129489-5129541)
chr8 (16-68)||(18068986-18069038)
chr8 (16-64)||(21016258-21016306)
chr8 (16-65)||(26195409-26195458)
chr8 (16-65)||(45338028-45338077)
chr8 (16-64)||(8018785-8018833)
chr8 (22-65)||(44874355-44874398)
chr8 (13-50)||(33741525-33741562)
chr8 (15-63)||(4308832-4308880)
chr8 (16-60)||(14855425-14855469)
chr8 (16-68)||(26672814-26672866)
chr8 (16-64)||(34713958-34714006)
chr8 (25-65)||(37433298-37433338)
[»] chr4 (31 HSPs)
chr4 (13-65)||(34316758-34316811)
chr4 (16-65)||(50514649-50514698)
chr4 (16-68)||(45688767-45688819)
chr4 (16-64)||(51266948-51266996)
chr4 (13-68)||(19328961-19329016)
chr4 (13-64)||(30475446-30475497)
chr4 (13-64)||(31754959-31755010)
chr4 (13-66)||(3769834-3769887)
chr4 (16-68)||(23765602-23765654)
chr4 (16-68)||(31487745-31487797)
chr4 (16-68)||(34016649-34016701)
chr4 (16-68)||(35808429-35808481)
chr4 (16-68)||(55669763-55669815)
chr4 (13-64)||(26040397-26040448)
chr4 (16-71)||(31168158-31168213)
chr4 (16-50)||(20811287-20811321)
chr4 (13-58)||(35675233-35675278)
chr4 (13-66)||(52021053-52021106)
chr4 (16-68)||(53566983-53567038)
chr4 (13-65)||(1457571-1457623)
chr4 (16-68)||(27839339-27839391)
chr4 (13-65)||(54339134-54339185)
chr4 (16-59)||(10100155-10100198)
chr4 (16-50)||(41956264-41956298)
chr4 (27-64)||(19876220-19876257)
chr4 (13-66)||(30199821-30199874)
chr4 (19-48)||(32131169-32131198)
chr4 (24-64)||(26831823-26831863)
chr4 (24-64)||(33951732-33951772)
chr4 (16-68)||(45088091-45088143)
chr4 (16-64)||(47188702-47188750)
[»] chr7 (33 HSPs)
chr7 (16-64)||(5240369-5240417)
chr7 (13-69)||(30388692-30388748)
chr7 (13-64)||(42222242-42222293)
chr7 (13-59)||(27053535-27053581)
chr7 (16-65)||(40763273-40763322)
chr7 (16-68)||(8380465-8380517)
chr7 (16-64)||(29034711-29034759)
chr7 (16-68)||(36279143-36279195)
chr7 (16-68)||(41188819-41188871)
chr7 (16-64)||(43567543-43567591)
chr7 (13-65)||(46478592-46478643)
chr7 (16-63)||(7322991-7323038)
chr7 (16-50)||(5348023-5348057)
chr7 (16-50)||(48454873-48454907)
chr7 (16-65)||(3681718-3681767)
chr7 (13-66)||(32204203-32204256)
chr7 (20-64)||(8258675-8258719)
chr7 (16-68)||(24359741-24359793)
chr7 (17-64)||(4686080-4686127)
chr7 (13-64)||(16931912-16931962)
chr7 (13-64)||(16937295-16937345)
chr7 (16-59)||(30538522-30538565)
chr7 (13-64)||(49069576-49069627)
chr7 (16-50)||(31626092-31626126)
chr7 (16-50)||(40194850-40194884)
chr7 (13-63)||(42552510-42552559)
chr7 (13-59)||(43958125-43958171)
chr7 (9-66)||(3720149-3720206)
chr7 (13-66)||(40774277-40774330)
chr7 (16-68)||(8292769-8292821)
chr7 (24-60)||(18800189-18800225)
chr7 (16-48)||(22521610-22521642)
chr7 (24-64)||(40066954-40066994)
[»] chr2 (27 HSPs)
chr2 (16-68)||(17603835-17603887)
chr2 (16-65)||(765186-765235)
chr2 (13-65)||(35445326-35445379)
chr2 (16-65)||(39085828-39085877)
chr2 (16-60)||(9201536-9201580)
chr2 (16-60)||(17095107-17095151)
chr2 (13-61)||(44299721-44299769)
chr2 (13-68)||(13997937-13997992)
chr2 (16-50)||(23685703-23685737)
chr2 (13-62)||(2239603-2239652)
chr2 (16-65)||(2966564-2966613)
chr2 (16-65)||(16361590-16361639)
chr2 (13-66)||(33864376-33864429)
chr2 (16-65)||(39401571-39401619)
chr2 (16-64)||(862613-862661)
chr2 (16-64)||(6999226-6999274)
chr2 (16-60)||(17056098-17056142)
chr2 (16-60)||(17068545-17068589)
chr2 (16-60)||(17074528-17074572)
chr2 (16-64)||(41436502-41436550)
chr2 (17-64)||(747528-747575)
chr2 (13-64)||(11659283-11659334)
chr2 (13-64)||(2805402-2805455)
chr2 (13-63)||(8327001-8327051)
chr2 (13-66)||(30831639-30831692)
chr2 (13-53)||(3454746-3454785)
chr2 (13-65)||(10900286-10900338)
[»] chr6 (11 HSPs)
chr6 (13-68)||(5578295-5578350)
chr6 (13-68)||(7875214-7875269)
chr6 (13-50)||(7880478-7880515)
chr6 (16-64)||(10855456-10855504)
chr6 (16-64)||(29692378-29692426)
chr6 (13-60)||(21186058-21186105)
chr6 (16-63)||(31220365-31220412)
chr6 (16-68)||(6866939-6866991)
chr6 (16-68)||(12191517-12191569)
chr6 (17-64)||(12175584-12175631)
chr6 (24-68)||(8324137-8324181)
[»] scaffold0062 (3 HSPs)
scaffold0062 (13-68)||(16805-16859)
scaffold0062 (13-68)||(26973-27027)
scaffold0062 (13-68)||(37139-37193)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 81 - 463
Target Start/End: Original strand, 4838370 - 4838746
Alignment:
Q  81 acatttaacacagtgagaatacataataagaatatggacaatgctaacaaatgcccccgtcctgaaggcaccgaagacactagttattggttaaagaaac 180  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||         ||||| ||||||| ||||||||||    
T  4838370 acatttaatacagtgagaatacataataagactatggacaatgctaacaaatgcccccgtcctggag---------acactggttattg-ttaaagaaac 4838459  T
Q  181 aaatataatagtgttgcatggtgttgttttcaa----aacttttgacttttttgacttcgttaatcaggataccggttagcatgaacctaaaactatatt 276  Q
    |||||||||||| ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  4838460 aaatataatagtattgcatggtgttgttttcaactaaaacttttgacttttttgacttcgttaatcaggataccggttagcatgaaattaaaactatatt 4838559  T
Q  277 ctatagtaatatagcaactgtaattagttgttaccatgtcgaggagcacatgaaaaccatagaatagaggacaggagagacagctaagaagagctgcact 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4838560 ctatagtaatatagcaactgtaattagttgttgccatgtcgaggagcacatgaaaaccatagaatagaggacaggagagacagctaagaagagctgcact 4838659  T
Q  377 gcacatatatttatggactctgcatgactacttttcaactctcattttcgaccacatcactgttcatcttcctcctctagactctat 463  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4838660 gcacatatatttatgggctctgcatgactacttttcaactctcattttcgaccacatcactgttcatcttcctcctctagactctat 4838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 1479221 - 1479169
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  1479221 attttgacttttaaaaagttaaatttatcacttttcattatttttcaatgcta 1479169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 39335497 - 39335541
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  39335497 attttgacttttaaaaagttaaattcatcactttttactattttt 39335541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 338852 - 338801
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||    
T  338852 aatattttgatttttaaaaagttaaatttatcactttttatcatttttcaat 338801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 12914196 - 12914251
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||    
T  12914196 aatattttgatttttaaaaaattaaatttatcacttttcaccatttttcaatgcta 12914251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 25017378 - 25017328
Alignment:
Q  14 atattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  25017378 atattttgacttttaaaaagttaaatttatcacttttcacaattttccaat 25017328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 1759841 - 1759889
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||    
T  1759841 attttgacttttaaaaagttaaatttatcacttttctccatttttcaat 1759889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 12068259 - 12068211
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  12068259 attttgacttttaaaaagttaaatttatcacttttcaccattttccaat 12068211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 13951321 - 13951269
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||  |||||||||||||||| || ||||||||||||||    
T  13951321 attttgacttttaaaaaaataaatttatcacttttcaccatttttcaatgcta 13951269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 8410166 - 8410209
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  8410166 attttgacttttaaaaagttaaatttatcattttttaccatttt 8410209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 39693031 - 39693086
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||| |||||||||||| ||||||||||| ||||||| | ||||||||||||    
T  39693031 aatattttaacttttaaaaagataaatttatcattttttaccacttttcaatgcta 39693086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 34546802 - 34546851
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| ||||||||||| ||||||||||||||||| || |||||||||||    
T  34546802 attttaacttttaaaaaattaaatttatcacttttcaccatttttcaatg 34546851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 35945270 - 35945319
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| || |||||||||||||||||||||||||| |||||||| |||||    
T  35945270 attttaacatttaaaaagttaaatttatcacttttcactattttccaatg 35945319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 38610376 - 38610327
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||||||    
T  38610376 ttttgacttttaaaaagttaaattcttcactttttatcatttttcaatgc 38610327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 4422049 - 4421997
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||| || |||||||||||||||||||||||| || ||||| ||||||||    
T  4422049 attttgatttgtaaaaagttaaatttatcacttttcaccattttccaatgcta 4421997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 25568377 - 25568325
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||| |||||||||||||||| |||||||||| |  ||||||||||||||    
T  25568377 attttgatttttaaaaagttaaatgtatcacttttcatcatttttcaatgcta 25568325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 35653340 - 35653288
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||| ||| ||||||||||||||||||||||| || ||||| ||||||||    
T  35653340 attttgattttcaaaaagttaaatttatcacttttcaccattttccaatgcta 35653288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 39069364 - 39069313
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||| |||||||| ||||||||| || ||||| ||||    
T  39069364 aatattttgacttttaaaatgttaaattcatcacttttcacaattttccaat 39069313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 4962601 - 4962567
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||||||||| |||||||||||||||||||||||    
T  4962601 attttgactttaaaaaagttaaatttatcactttt 4962567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 5151513 - 5151547
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||| ||||    
T  5151513 attttgacttttaaaaagttaaatttatcattttt 5151547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 10163714 - 10163677
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  10163714 aatattttgacttttaaaaagttaaattcttcactttt 10163677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 27823291 - 27823331
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||| || ||||| ||||    
T  27823291 ttttaaaaagttaaatttatcacttttcaccattttccaat 27823331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 37243879 - 37243919
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||| || ||||| ||||    
T  37243879 ttttaaaaagttaaatttatcacttttcaccattttccaat 37243919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 43414149 - 43414097
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||| ||||||||||||||||| |||| |||| || ||||| ||||||||    
T  43414149 attttgatttttaaaaagttaaattgatcatttttcaccattttccaatgcta 43414097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 392217 - 392165
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  392217 attttgacttttaaaaagttaaatttatcactttttaccatttttcaatgcta 392165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 37509132 - 37509186
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgct 67  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  37509132 aatattttgacttttaaaaagttaaatttatcacttttcactattttccaatgct 37509186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 4759935 - 4759883
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  4759935 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaatgcta 4759883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 51817400 - 51817345
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  51817400 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgcta 51817345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 8715586 - 8715534
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  8715586 attttgacttttaaaaagttaaatttatcacttttcaccattttccaatgcta 8715534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 9067473 - 9067421
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  9067473 attttgacttttaaaaagttaaatttatcacttttcaccattttccaatgcta 9067421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 32415593 - 32415645
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  32415593 attttgacttttaaaaagttaaatttatgacttttcacaatttttcaatgcta 32415645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 36730238 - 36730190
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  36730238 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaat 36730190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8847540 - 8847488
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||||| |||||    
T  8847540 aatattttaacttttaaaaagttaaattaatcactttttaccattttccaatg 8847488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 34060854 - 34060803
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||| ||||||||||||||||||| ||||||||| || ||||||||||    
T  34060854 aatattttaacttttaaaaagttaaattcatcacttttcaccatttttcaat 34060803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 41345996 - 41346047
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||| ||||||||||| |||||||||| |||||| |||||||||||||    
T  41345996 aatattttaacttttaaaaaattaaatttattacttttcactatttttcaat 41346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 52570803 - 52570854
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||| ||||||||||||| || ||||| ||||    
T  52570803 aatattttgacttttaaaaagttatatttatcacttttcaccattttccaat 52570854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 44570471 - 44570422
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| |||||    
T  44570471 attttgacttttaaaaagttaaagttatcacttttcaccattttccaatg 44570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 49976229 - 49976192
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||| |||||||||    
T  49976229 aatattttgacttttaaaaagttaaattcatcactttt 49976192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 20227465 - 20227413
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||| |||||||| |||||||||||||||||||| |  ||||||||||||||    
T  20227465 attttaacttttaagaagttaaatttatcacttttcatcatttttcaatgcta 20227413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29915660 - 29915612
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  29915660 attttgacttttaaaaagttaaatttataattttttaccattttccaat 29915612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29964813 - 29964765
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  29964813 attttgacttttaaaaagttaaatttataattttttaccattttccaat 29964765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 11316987 - 11317033
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    |||||||||||||||||||||||||||| || |||||| || |||||    
T  11316987 aatattttgacttttaaaaagttaaattcataacttttcaccatttt 11317033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 26850582 - 26850536
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    |||||||| ||||||||||| ||||||| |||||||||||| |||||    
T  26850582 aatattttaacttttaaaaaattaaattcatcactttttaccatttt 26850536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 31647328 - 31647362
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||| ||||    
T  31647328 attttgacttttaaaaagttaaatttatcattttt 31647362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 35306356 - 35306390
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||| |||||||||||||||||||||||||||||    
T  35306356 attttaacttttaaaaagttaaatttatcactttt 35306390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 45899632 - 45899594
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcacttttt 51  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  45899632 aatattttgacttttaaaaatttaaattcatcacttttt 45899594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 46317510 - 46317544
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||| ||||    
T  46317510 attttgacttttaaaaagttaaatttatcattttt 46317544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 13647110 - 13647073
Alignment:
Q  27 taaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  13647110 taaaaagttaaattcatcacttttcactatttttcaat 13647073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 21324537 - 21324574
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  21324537 aatattttaacttttaaaaagttaaatctatcactttt 21324574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 48861269 - 48861220
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||||||| |||||||||| | |||| |||||| ||||||||||||    
T  48861269 ttttgacttttataaagttaaatatttcaccttttaccatttttcaatgc 48861220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 10854883 - 10854935
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||| |||||||||||||||||||||| | |||| || ||||| ||||||||    
T  10854883 attttaacttttaaaaagttaaatttattagttttcaccattttccaatgcta 10854935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 2125789 - 2125737
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  2125789 attttgacttttaaaaagttaaatttatcacttttcacaatttttcaatgcta 2125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 33929990 - 33930042
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  33929990 attttgacttttaaaaagttaaatttatcagttttcactatttttcaatgcta 33930042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 4940825 - 4940770
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  4940825 aatattttgacttttaaaaagttaaatttatcacttttaaccattttccaatgcta 4940770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 26469667 - 26469612
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  26469667 aatattttgacttttaaaaagttaaatttatcatttttcattatttttcaatgcta 26469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 41147563 - 41147508
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  41147563 aatattttgacttttaaaaagttaaattaatcattttttaccatttttcaatgcta 41147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 50295518 - 50295467
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  50295518 aatattttgacttttaaaaagttaaatttatcacttttcactattttccaat 50295467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 11386005 - 11386057
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  11386005 attttgacttttaaaaagttaaatttatcaatttttaccattttccaatgcta 11386057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 42607406 - 42607354
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  42607406 attttgacttttaaaaagttaaatttatcatttttcaccatttttcaatgcta 42607354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 47655453 - 47655401
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  47655453 attttgacttttaaaaagttaaatttatcaattttcaccatttttcaatgcta 47655401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 17402969 - 17403016
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  17402969 aatattttgacttttaaaaagttaaattcatcactttttaccattttt 17403016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 22346322 - 22346271
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  22346322 aatattttgacttttaaaaaattaaatttatcacttttcaccatttttcaat 22346271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 40845272 - 40845323
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  40845272 aatattttgatttttaaaaagttaaatttatcacttttcaccatttttcaat 40845323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 41898944 - 41898893
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  41898944 aatattttaacttttaaaaagttaaattcatcactttttaccatttttcaat 41898893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 4656048 - 4656089
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  4656048 ttttaaaaagttaaatttatcactttttactattttccaatg 4656089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 52396464 - 52396501
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52396464 aatattttgacttttaaaaagttaaatttatcactttt 52396501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 6170633 - 6170581
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| ||||||||    
T  6170633 attttgacttttaaaaagttaaatttatcatttttctctattttccaatgcta 6170581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 28850991 - 28850943
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||    
T  28850991 ttttgacttttaaaaagttaaatttatcacttttcaccattttccaatg 28850943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 31975508 - 31975560
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||| ||||||||||||||||||| |||||||||  |||||||||||    
T  31975508 aatattttgatttttaaaaagttaaatttaccactttttatcatttttcaatg 31975560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 34874591 - 34874643
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||    
T  34874591 attttgacttttaaaaaattaaatttatcacttttcaccattttccaatgcta 34874643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 49508818 - 49508782
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcacttt 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  49508818 aatattttgacttttaaaaagttaaatttatcacttt 49508782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 47895355 - 47895406
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||| |||||||||||||||||||||| ||| || ||||||||||    
T  47895355 aatattttgacatttaaaaagttaaatttatcacctttcaccatttttcaat 47895406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 5945447 - 5945493
Alignment:
Q  19 ttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||    
T  5945447 ttgacttttaaaaagtaaaatttatcacttttcaccatttttcaatg 5945493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 28277556 - 28277515
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  28277556 ttttaaaaagttaaatttatcactttttatcatttttcaatg 28277515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32213971 - 32213922
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| |||||    
T  32213971 attttgacttttaaaaaattaaatttatcacttttcaccattttccaatg 32213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 45721776 - 45721825
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||| |||||    
T  45721776 attttgatttttaaaaagttaaatttatcagtttttaccattttccaatg 45721825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 7190557 - 7190505
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||| ||||||||||||||||||||||||||||| |  |||||| |||||||    
T  7190557 attttaacttttaaaaagttaaatttatcacttttcatcatttttgaatgcta 7190505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11385892 - 11385844
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||| |||||| || ||||| ||||    
T  11385892 attttgacttttaaaaagttaaatttataacttttcaccattttccaat 11385844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 44043500 - 44043536
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttac 53  Q
    ||||||||||||||||||||||| |||||||||||||    
T  44043500 ttttgacttttaaaaagttaaatatatcactttttac 44043536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 50154497 - 50154549
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||| |||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  50154497 attttaacttttaaaaggttaaatttatcattttttatcatttttcaatgcta 50154549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 46296270 - 46296231
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcacttttta 52  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  46296270 aatattttgacttttaaaaagttaaatttattatttttta 46296231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 2496061 - 2496111
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaa 63  Q
    |||||||| |||||||||||||||| || |||  |||||||||||||||||    
T  2496061 aatatttttacttttaaaaagttaatttcatccatttttactatttttcaa 2496111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 27209803 - 27209754
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| |||||||||||||||||||||||| |||| || ||||| |||||    
T  27209803 attttaacttttaaaaagttaaatttatcaattttcaccattttccaatg 27209754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 29966843 - 29966899
Alignment:
Q  13 aatattttgacttttaaaaag-ttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||| |||||  |||||||||||| ||||| | ||||||||||||||    
T  29966843 aatattttgactttaaaaaaaattaaatttatcattttttgccatttttcaatgcta 29966899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 43433807 - 43433843
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactattttt 60  Q
    ||||||||||||||||||||||||||| || ||||||    
T  43433807 ttttaaaaagttaaatttatcacttttcaccattttt 43433843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 44286893 - 44286937
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatt 57  Q
    |||||||| | |||||||||||||||||||||| |||| ||||||    
T  44286893 aatattttaatttttaaaaagttaaatttatcatttttcactatt 44286937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 6433565 - 6433620
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  6433565 aatattttaacttttaaaaagttaaatttataactttttaccatttttcaatgcta 6433620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 25249429 - 25249374
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  25249429 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgcta 25249374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 10694831 - 10694875
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  10694831 attttgacttttaaaaagttaaatttatcactttttaccattttt 10694875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 26892807 - 26892858
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  26892807 aatattttaacttttaaaaagttaaatttatcattttttacaatttttcaat 26892858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 19389397 - 19389347
Alignment:
Q  14 atattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  19389397 atattttgacttttaaaaagttaaatttatcacttttcacaattttccaat 19389347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 6939182 - 6939231
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||    
T  6939182 attttgacttttaaaaagttaaatttatcacttgtcaccatttttcaatg 6939231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 21016142 - 21016093
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||| |||||||||| || |||||||||||    
T  21016142 attttgacttttaaaaagttaaatctatcacttttaaccatttttcaatg 21016093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 4989957 - 4990009
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||| ||||||||||||||||||||| |||| |||||||| ||||||||    
T  4989957 attttgacatttaaaaagttaaatttatcatttttcactattttccaatgcta 4990009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 5129541 - 5129489
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||| ||||||||||||||||| |  ||||||||||||||    
T  5129541 attttgacttttaaaaaattaaatttatcacttttcatcatttttcaatgcta 5129489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 18068986 - 18069038
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||| |||||||||||||||||||||||||| || ||||| ||||||||    
T  18068986 attttgacctttaaaaagttaaatttatcacttttcaccattttccaatgcta 18069038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 21016258 - 21016306
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||    
T  21016258 attttgacttttaaaaagttaaatctatcacttttcaccatttttcaat 21016306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 26195458 - 26195409
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  26195458 attttaacttttaaaaagttaaatttatcacttttcacaattttccaatg 26195409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 45338028 - 45338077
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||| |||||||||||||||||||||| |||| || |||||||||||    
T  45338028 attttgatttttaaaaagttaaatttatcatttttcaccatttttcaatg 45338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 8018785 - 8018833
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| ||||    
T  8018785 attttgatttttaaaaagttaaatttatcacttttcaccattttccaat 8018833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 44874355 - 44874398
Alignment:
Q  22 acttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||| ||||||||||||||||| || |||||||||||    
T  44874355 acttttaaaaatttaaatttatcacttttcaccatttttcaatg 44874398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 33741562 - 33741525
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  33741562 aatattttaacttttaaaaagttaaatttatcattttt 33741525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 4308832 - 4308880
Alignment:
Q  15 tattttgacttttaaaaagttaaatttatcactttttactatttttcaa 63  Q
    |||||| ||||||| ||||||||||| |||| ||||||| |||||||||    
T  4308832 tattttaacttttataaagttaaattcatcattttttaccatttttcaa 4308880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 14855469 - 14855425
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    ||||| |||||||||| |||||||||||| ||||| |||||||||    
T  14855469 attttaacttttaaaatgttaaatttatctcttttcactattttt 14855425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 26672814 - 26672866
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||| |||||||||||  ||||||  ||||| ||||||||    
T  26672814 attttgacttttaaaaaattaaatttatccttttttatcattttccaatgcta 26672866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 34714006 - 34713958
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||| |||| ||||||||||||||  || ||||||||||    
T  34714006 attttgacttttaagaagtgaaatttatcactttgcaccatttttcaat 34713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 37433298 - 37433338
Alignment:
Q  25 tttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||||| |  |||||||||||    
T  37433298 tttaaaaagttaaatttatcacttttcatcatttttcaatg 37433338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 34316811 - 34316758
Alignment:
Q  13 aatattttgacttttaaaaagttaaa-tttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  34316811 aatattttgacttttaaaaagttaaattttatcacttttcactatttttcaatg 34316758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 50514698 - 50514649
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  50514698 attttaacttttaaaaagttaaatttatcactttttaccatttttcaatg 50514649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 45688767 - 45688819
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  45688767 attttgacttttaaaaagttaaatttatcacttttcatcatttttcaatgcta 45688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 51266948 - 51266996
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51266948 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaat 51266996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 19329016 - 19328961
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  19329016 aatattttgacttttaaaaagttaaatttatcacatttcaccattttccaatgcta 19328961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 30475446 - 30475497
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  30475446 aatattttgacatttaaaaagttaaatttatcacttttcaccatttttcaat 30475497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 31754959 - 31755010
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  31754959 aatattttgacttttaaaaagttaaatttatcacttttcatcatttttcaat 31755010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 3769834 - 3769887
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||| ||||||||||||| ||||||||||||||| || ||||||||||||    
T  3769834 aatattttaacttttaaaaagtcaaatttatcacttttcaccatttttcaatgc 3769887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23765602 - 23765654
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| ||||||||    
T  23765602 attttgatttttaaaaagttaaatttatcacttttcaccattttccaatgcta 23765654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 31487745 - 31487797
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||  |||||||||| ||||||||||||||| |||||||||||||||||    
T  31487745 attttgatctttaaaaagtcaaatttatcacttttaactatttttcaatgcta 31487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 34016649 - 34016701
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| ||||||||    
T  34016649 attttgacttttaaaaagttaaattcatcacttttcaccattttccaatgcta 34016701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 35808481 - 35808429
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| |||| || ||||| ||||||||    
T  35808481 attttgacttttaaaaagttaaatttatcatttttcacaattttccaatgcta 35808429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 55669763 - 55669815
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| |||| || ||||| ||||||||    
T  55669763 attttgacttttaaaaagttaaatttatcatttttcaccattttccaatgcta 55669815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 26040448 - 26040397
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||| ||||    
T  26040448 aatattttgacttttaaaaagttaaacttatcacttttcaccattttccaat 26040397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 31168158 - 31168213
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgctaaaa 71  Q
    ||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||    
T  31168158 attttgactttaaaaaaattaaatttatcacttttcaccattttccaatgctaaaa 31168213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 20811287 - 20811321
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  20811287 attttgacttttaaaaagttaaatttatcactttt 20811321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 35675278 - 35675233
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactattt 58  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||    
T  35675278 aatattttaacttttaaaaagttaaattcatcacttttcactattt 35675233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 52021053 - 52021106
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||| || ||||||||||||||||||||| |||||||  |||||||||||    
T  52021053 aatattttaacatttaaaaagttaaatttatcattttttacagtttttcaatgc 52021106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 53567038 - 53566983
Alignment:
Q  16 attttgacttttaaaaagttaaatttatca---ctttttactatttttcaatgcta 68  Q
    ||||| |||||||||||||||||||||| |   |||||||||||||||||||||||    
T  53567038 attttaacttttaaaaagttaaatttattagtactttttactatttttcaatgcta 53566983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 1457623 - 1457571
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||| ||||||||||| |||||||||||| |||||| || |||||||||    
T  1457623 aatattttaacttttaaaaaattaaatttatcaatttttattacttttcaatg 1457571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 27839391 - 27839339
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||| |||||||||||| |||| |  ||||||||||||||    
T  27839391 attttgacttttaaaaacttaaatttatcatttttcatcatttttcaatgcta 27839339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 54339134 - 54339185
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||| |||||||||||| |||| || |||||||||||    
T  54339134 aatattttgacttttaaaaaattaaatttatca-ttttcaccatttttcaatg 54339185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 10100198 - 10100155
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    |||||||||||||||||||||||||||| |||||| || |||||    
T  10100198 attttgacttttaaaaagttaaatttataacttttcaccatttt 10100155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 41956298 - 41956264
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||| ||||    
T  41956298 attttgacttttaaaaagttaaatttatcattttt 41956264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 19876257 - 19876220
Alignment:
Q  27 taaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  19876257 taaaaagttaaatttatcacttttcactattttccaat 19876220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 30199874 - 30199821
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||| ||||||||||| |||| || |||||||||||  ||||||||||||    
T  30199874 aatattttaacttttaaaaaattaatttcatcactttttatcatttttcaatgc 30199821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 32131169 - 32131198
Alignment:
Q  19 ttgacttttaaaaagttaaatttatcactt 48  Q
    ||||||||||||||||||||||||||||||    
T  32131169 ttgacttttaaaaagttaaatttatcactt 32131198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 26831863 - 26831823
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  26831863 ttttaaaaagataaatttatcactttttaccattttacaat 26831823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 33951732 - 33951772
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||| || ||||| ||||    
T  33951732 ttttaaaaagttaaatttatcacttttcacaattttccaat 33951772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 45088091 - 45088143
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||| ||||| ||||||||||||||||| |  ||||| ||||||||    
T  45088091 attttgactttcaaaaaattaaatttatcacttttcatcattttccaatgcta 45088143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 47188750 - 47188702
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||| | |||||||||||||||||||| || ||||| ||||    
T  47188750 attttgactttttagaagttaaatttatcacttttcaccattttccaat 47188702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 5240417 - 5240369
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  5240417 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaat 5240369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30388748 - 30388692
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgctaa 69  Q
    ||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||    
T  30388748 aatattttgacttttaaaaagttaaatttatcatttttcaccatttttcaatactaa 30388692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 42222242 - 42222293
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  42222242 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaat 42222293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 27053581 - 27053535
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  27053581 aatattttgacttttaaaaagttaaatttatcacttttcaccatttt 27053535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 40763273 - 40763322
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  40763273 attttaacttttaaaaagttaaatttatcacttttcaccatttttcaatg 40763322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8380465 - 8380517
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  8380465 attttgacttttaaaaagttaaatttatcacttttcatcattttccaatgcta 8380517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 29034711 - 29034759
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  29034711 attttgacttttaaaaagttaaatttatcacttttcaccattttccaat 29034759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 36279143 - 36279195
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| ||||||||    
T  36279143 attttgatttttaaaaagttaaatttatcacttttcaccattttccaatgcta 36279195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 41188871 - 41188819
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||| ||| || ||||| ||||||||    
T  41188871 attttgacttttaaaaagttaaatttatcacctttcaccattttccaatgcta 41188819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 43567591 - 43567543
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  43567591 attttgacttttaaaaagttaaatttatcacttttcaccattttccaat 43567543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 46478643 - 46478592
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  46478643 aatattttaacttttaaaaagttaaatttatca-ttttcactatttttcaatg 46478592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 7323038 - 7322991
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaa 63  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||    
T  7323038 attttgacttttaaaaaattaaatttatcacttttcaccatttttcaa 7322991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 5348057 - 5348023
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  5348057 attttgacttttaaaaagttaaatttatcactttt 5348023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 48454907 - 48454873
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  48454907 attttgacttttaaaaagttaaatttatcactttt 48454873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 3681718 - 3681767
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  3681718 attttaacttttaaaaagttaaatttatcacttttcaccattttccaatg 3681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 32204203 - 32204256
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||| ||||||||||||||||||| ||||||||| |  ||||||||||||    
T  32204203 aatattttaacttttaaaaagttaaattcatcacttttcatcatttttcaatgc 32204256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 8258719 - 8258675
Alignment:
Q  20 tgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||    
T  8258719 tgactattaaaaagttaaatttatcacttttcaccatttttcaat 8258675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 24359793 - 24359741
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||    
T  24359793 attttaacttttaaaaagttaaatttatccctttttaccattttccattgcta 24359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 4686127 - 4686080
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||| ||||||||||||||||||| ||||||||| || ||||||||||    
T  4686127 ttttaacttttaaaaagttaaattaatcacttttcaccatttttcaat 4686080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 16931912 - 16931962
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||| ||||    
T  16931912 aatattttgacttttaaaaagttaaattattcac-ttttactattttccaat 16931962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 16937295 - 16937345
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||| ||||    
T  16937295 aatattttgacttttaaaaagttaaattattcac-ttttactattttccaat 16937345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 30538565 - 30538522
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||    
T  30538565 attttgatttttaaaaagttaaatttatcatttttcactatttt 30538522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 49069576 - 49069627
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||| |||| ||||||||||||| ||||||||||||| || ||||||||||    
T  49069576 aatatattgatttttaaaaagttagatttatcacttttcaccatttttcaat 49069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 31626126 - 31626092
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||||| |||||||||||||||||||||||||||    
T  31626126 attttgatttttaaaaagttaaatttatcactttt 31626092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 40194850 - 40194884
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||||||||||||||| |||||||||||||||||    
T  40194850 attttgacttttaaaaaattaaatttatcactttt 40194884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 42552559 - 42552510
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaa 63  Q
    ||||||||||||||||||||||| |||| || | |||||||||||||||||    
T  42552559 aatattttgacttttaaaaagtt-aattcattattttttactatttttcaa 42552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 43958171 - 43958125
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttt 59  Q
    |||||||||||||||||||| |||||||||||| |||| || |||||    
T  43958171 aatattttgacttttaaaaaattaaatttatcatttttcacaatttt 43958125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 3720206 - 3720149
Alignment:
Q  9 caagaatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    ||||||| |||| |||||||||||||||||||||||| |||  || |||| |||||||    
T  3720206 caagaatgttttaacttttaaaaagttaaatttatcattttacaccatttgtcaatgc 3720149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 40774330 - 40774277
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||| ||||||||||||||||||| |||| |||| |  ||||||||||||    
T  40774330 aatattttaacttttaaaaagttaaattcatcaattttcatcatttttcaatgc 40774277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8292769 - 8292821
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||  |||||||| |||||| || ||||| ||||||||    
T  8292769 attttgacttttaaaaaggcaaatttataacttttcaccattttccaatgcta 8292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 18800225 - 18800189
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||||||||||||||||||||| |||| |||||||    
T  18800225 ttttaaaaagttaaatttatcactctttattattttt 18800189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 22521610 - 22521642
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactt 48  Q
    |||||||||||||| ||||||||||||||||||    
T  22521610 attttgacttttaagaagttaaatttatcactt 22521642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 40066994 - 40066954
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||| |||| || ||||||||||    
T  40066994 ttttaaaaagttaaatttatcatttttcaccatttttcaat 40066954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 17603835 - 17603887
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  17603835 attttgacttttaaaaagttaaatttatcattttttatcatttttcaatgcta 17603887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 765235 - 765186
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  765235 attttgacttttaaaaagttaaatttatcacttttcacaattttccaatg 765186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 35445379 - 35445326
Alignment:
Q  13 aatattttgactttt-aaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  35445379 aatattttgacttttgaaaaagttaaatttatcacttttcaccatttttcaatg 35445326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 39085877 - 39085828
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  39085877 attttgacttttaaaaagttaaatttatcactttttatcattttccaatg 39085828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 9201580 - 9201536
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  9201580 attttgacttttaaaaagttaaatttatcacttttcaccattttt 9201536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17095151 - 17095107
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  17095151 attttgacttttaaaaagttaaatttatcacttttcaccattttt 17095107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 44299769 - 44299721
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttc 61  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||||    
T  44299769 aatattttgacttttaaaatgttaaatttatcacttttcaccatttttc 44299721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13997992 - 13997937
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||| | |||||||||||||||||||||| |||| || ||||||||||||||    
T  13997992 aatattttaatttttaaaaagttaaatttatcatttttcacaatttttcaatgcta 13997937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 23685737 - 23685703
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  23685737 attttgacttttaaaaagttaaatttatcactttt 23685703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 2239603 - 2239652
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttca 62  Q
    |||||||| ||||||||||||||||||| |||| ||||||| ||||||||    
T  2239603 aatattttaacttttaaaaagttaaattcatcattttttaccatttttca 2239652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 2966564 - 2966613
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| |||||    
T  2966564 attttgacttttaaaaaattaaatttatcacttttcaccattttccaatg 2966613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 16361590 - 16361639
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||| |||||    
T  16361590 attttgacttttataaagttaaatttatcaatttttaccattttccaatg 16361639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 33864376 - 33864429
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    ||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||    
T  33864376 aatattttgacttttaaaatgttaaatttattacttttcaccattttccaatgc 33864429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 39401619 - 39401571
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    ||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  39401619 attttgacttttaaaaagttaaa-ttatcacttttcaccatttttcaatg 39401571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 862613 - 862661
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  862613 attttgactcttaaaaagttaaatttatcacttttcaccattttccaat 862661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 6999226 - 6999274
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||||||||||| |||| || ||||| ||||    
T  6999226 attttgacttttaaaaagttaaatttatcatttttcaccattttccaat 6999274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17056142 - 17056098
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||| |||||||||||||||||||||||||||| || ||||||    
T  17056142 attttgtcttttaaaaagttaaatttatcacttttcaccattttt 17056098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17068589 - 17068545
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||| |||||||||||||||||||||||||||| || ||||||    
T  17068589 attttgtcttttaaaaagttaaatttatcacttttcaccattttt 17068545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17074572 - 17074528
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||| |||||||||||||||||||||||||||| || ||||||    
T  17074572 attttgtcttttaaaaagttaaatttatcacttttcaccattttt 17074528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 41436502 - 41436550
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||||| |||||||||||| |  ||||||||||    
T  41436502 attttgacttttaaaaagttaagtttatcacttttcatcatttttcaat 41436550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 747575 - 747528
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||| |||||||||||||||||| |||||||||| |||||||| ||||    
T  747575 ttttaacttttaaaaagttaaatctatcacttttcactattttccaat 747528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 11659283 - 11659334
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||||||| | |||||||||||||||||  |||||||| |||||||||||||    
T  11659283 aatattttaatttttaaaaagttaaattcttcacttttcactatttttcaat 11659334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 2805402 - 2805455
Alignment:
Q  13 aatattttgacttttaaaa--agttaaatttatcactttttactatttttcaat 64  Q
    |||||||||||||||||||  ||||||||| ||||||||| | |||||||||||    
T  2805402 aatattttgacttttaaaaaaagttaaattcatcacttttaattatttttcaat 2805455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 8327001 - 8327051
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaa 63  Q
    |||||||| |||||||||||||||||||| |||||||| | ||||| ||||    
T  8327001 aatattttaacttttaaaaagttaaatttttcacttttcattatttctcaa 8327051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 30831639 - 30831692
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgc 66  Q
    |||||||| ||||||||||||||||||| |||| ||||||  |||||| |||||    
T  30831639 aatatttttacttttaaaaagttaaattcatcattttttataattttttaatgc 30831692  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 3454785 - 3454746
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttac 53  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  3454785 aatatttt-acttttaaaaagttaaagttatcactttttac 3454746  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 10900338 - 10900286
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatg 65  Q
    |||||||| ||||||||||| | ||||| |||||||||||  |||||||||||    
T  10900338 aatattttaacttttaaaaaataaaattcatcactttttatcatttttcaatg 10900286  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 5578295 - 5578350
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||||||||||||||||||| || | | |||||||||||||||    
T  5578295 aatattttgacttttaaaaagttaaatttatcaattctcattatttttcaatgcta 5578350  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 7875269 - 7875214
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  7875269 aatattttgacttttaaaaagttaaatttatcacttttcatcattttccaatgcta 7875214  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 7880515 - 7880478
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttt 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7880515 aatattttgacttttaaaaagttaaatttatcactttt 7880478  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 10855456 - 10855504
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  10855456 attttgacttttaaaaagttaaatttatcacttttcatcatttttcaat 10855504  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29692426 - 29692378
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  29692426 attttgactcttaaaaagttaaatttatcacttttcaccatttttcaat 29692378  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 21186105 - 21186058
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactattttt 60  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  21186105 aatattttaacttttaaaaagttaaattcatcactttttaccattttt 21186058  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 31220412 - 31220365
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaa 63  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  31220412 attttaacttttaaaaagttaaattcatcactttttaccatttttcaa 31220365  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 6866939 - 6866991
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||| |||||||||||||||||| || |||||  |||||||    
T  6866939 attttgacttttaaaaggttaaatttatcacttttcaccattttcaaatgcta 6866991  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12191517 - 12191569
Alignment:
Q  16 attttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    ||||||||||||||||| ||||||||||||||||| || ||||  ||||||||    
T  12191517 attttgacttttaaaaaattaaatttatcacttttcaccatttaccaatgcta 12191569  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 12175584 - 12175631
Alignment:
Q  17 ttttgacttttaaaaagttaaatttatcactttttactatttttcaat 64  Q
    |||| |||||||||||||||||||||||| ||||||  ||||||||||    
T  12175584 ttttaacttttaaaaagttaaatttatcagtttttatcatttttcaat 12175631  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 8324181 - 8324137
Alignment:
Q  24 ttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||| |||| || |||| |||||||||    
T  8324181 ttttaaaaagttaaatttatcatttttcacaatttctcaatgcta 8324137  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 16859 - 16805
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||    
T  16859 aatattttgacttttaaaaagttacatttatcatttttcacta-ttttcaatgcta 16805  T

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Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 27027 - 26973
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||    
T  27027 aatattttgacttttaaaaagttacatttatcatttttcacta-ttttcaatgcta 26973  T

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Target: scaffold0062; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 37193 - 37139
Alignment:
Q  13 aatattttgacttttaaaaagttaaatttatcactttttactatttttcaatgcta 68  Q
    |||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||    
T  37193 aatattttgacttttaaaaagttacatttatcatttttcacta-ttttcaatgcta 37139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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