View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19469_low_5 (Length: 414)
Name: NF19469_low_5
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19469_low_5 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 44 - 399
Target Start/End: Original strand, 2997348 - 2997703
Alignment:
| Q |
44 |
ggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttat |
143 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997348 |
ggccgattttcaaagggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttat |
2997447 |
T |
|
| Q |
144 |
tgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaatttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997448 |
tgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaatttt |
2997547 |
T |
|
| Q |
244 |
ttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaaccaaagttcaaagacaaacccaccatagtggtat |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997548 |
ttcaataacgaaaaagggaagttgattttcaagtaacattaaatttgttgttataccatcatcgaaccaaagttcaaagacaaacccaccatagtggtat |
2997647 |
T |
|
| Q |
344 |
ctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2997648 |
ctcaagaaaagttcaattataaaaccggaatcgattaagattaacttaacaagttc |
2997703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 2658908 - 2659309
Alignment:
| Q |
1 |
actcggtagatgtattatctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgc |
100 |
Q |
| |
|
||||||||||||||| ||| |||||||| || ||| |||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658908 |
actcggtagatgtatcatccgttcgtcggtcgcgttattactcggtcgaatttcaataggaagttgcaaatgaaatatcctaatcagatcagtgaagtgc |
2659007 |
T |
|
| Q |
101 |
cttatactaatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||| | |||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
2659008 |
attatactaatatcaccattatcaaaaaacaagtttgatttattggaagaataaaaatatttaatagtgagttcaagaaaaccagggatcgtagtcttag |
2659107 |
T |
|
| Q |
201 |
gattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacc |
300 |
Q |
| |
|
|| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| || |||||| |
|
|
| T |
2659108 |
gaacactagcatttgtagaactcgatgaaagtttgtaaatttcttcaataacgaaaaagggaagctgattttcaagtaacaataaatctaatgctatacc |
2659207 |
T |
|
| Q |
301 |
atcatcgaaccaaagttcaaagacaaacccaccat---agtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagt |
397 |
Q |
| |
|
|||||| |||||| ||| ||| | ||||||| ||| | | |||| || | ||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2659208 |
atcatctaaccaaggtttaaatagaaacccatcatcataatagtatgtccaaaaaagttgaattataaaacaggaatcgattaagattaacttaacaagt |
2659307 |
T |
|
| Q |
398 |
tc |
399 |
Q |
| |
|
|| |
|
|
| T |
2659308 |
tc |
2659309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 2964666 - 2964370
Alignment:
| Q |
5 |
ggtagatgtattatctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctta |
104 |
Q |
| |
|
||||||||||||||||||| || ||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2964666 |
ggtagatgtattatctgtttgttgatgttgtctctactcggccgattttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctta |
2964567 |
T |
|
| Q |
105 |
tactaatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggatt |
204 |
Q |
| |
|
||||||||||||| | ||||||| ||| |||||||||||| || || ||| ||| | ||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
2964566 |
tactaatatcacccttatcaaaatccaattttgatttattgtaataatcaaaataatcagtagtgagtttaagaaaagaagggatgttagtgttaggaac |
2964467 |
T |
|
| Q |
205 |
actagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacca |
301 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
2964466 |
actagcatttgtagaactcaatgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaagtaacattaaatctgatcttatacca |
2964370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 36 - 399
Target Start/End: Original strand, 3003730 - 3004087
Alignment:
| Q |
36 |
ctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtt |
135 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||| || |
|
|
| T |
3003730 |
ctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatccaattt |
3003829 |
T |
|
| Q |
136 |
tgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactg |
235 |
Q |
| |
|
|||||||||| || || ||| ||| ||||||||||| ||||||| || ||||||||||| ||||| | ||| | |||||||||||| |
|
|
| T |
3003830 |
tgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatgaaagactg |
3003917 |
T |
|
| Q |
236 |
taaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaaccaaagttcaaagacaa---acccac |
332 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||||| ||| |||||| ||| ||||| || ||| || |
|
|
| T |
3003918 |
taaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccattatctaaccaaggtttaaagagaatgcaccgac |
3004017 |
T |
|
| Q |
333 |
---catagtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
|||| | ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3004018 |
gatcataatagtatctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttc |
3004087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 2934743 - 2934371
Alignment:
| Q |
18 |
tctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacc |
117 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934743 |
tctgttcgtcgaacatgtctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacc |
2934644 |
T |
|
| Q |
118 |
atcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaa---gggatcatagtgttaggattactagcattt |
214 |
Q |
| |
|
| ||||||| ||| |||||||||||| || || ||| ||| |||||||||| ||||||| || | ||||||||||| |||| | ||| |
|
|
| T |
2934643 |
cttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtctaagaaaagaatattgtatcatagtgttgggatcattag----- |
2934549 |
T |
|
| Q |
215 |
gtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaaccaaa |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||| || |
|
|
| T |
2934548 |
-------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttataccagtatctaacaaag |
2934456 |
T |
|
| Q |
315 |
gttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
||| ||||| | ||| |||| | || |||| | ||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2934455 |
gtttaaagagacgcccttcataatagtctctccaaaaaagttgaattataaaagcggaatctattaaaattaacttaacaagttc |
2934371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 399
Target Start/End: Complemental strand, 2927285 - 2926932
Alignment:
| Q |
34 |
gtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaag |
133 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||| ||| |
|
|
| T |
2927285 |
gtctctactcggccgactttcaataggatgttgcaaatgaaatatccgaatcagatcagtgaagtgccttataataatatcacccttatcaaaattcaat |
2927186 |
T |
|
| Q |
134 |
tttgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagac |
233 |
Q |
| |
|
|||||||||||| || || ||| ||| ||||||||||| ||||||| || ||||||||||| ||||| | ||| | |||||||||| |
|
|
| T |
2927185 |
tttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatgaaagac |
2927098 |
T |
|
| Q |
234 |
tgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaaccaaagttcaaagacaaacccacc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||| ||| |||||| ||| ||||| | |||| | |
|
|
| T |
2927097 |
tgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatctaaccaaggtttaaagagacacccttc |
2926998 |
T |
|
| Q |
334 |
atagtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
|| | | || || | ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2926997 |
gtaataggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttc |
2926932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 36 - 399
Target Start/End: Complemental strand, 2952065 - 2951714
Alignment:
| Q |
36 |
ctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtt |
135 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| || |
|
|
| T |
2952065 |
ctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattt |
2951966 |
T |
|
| Q |
136 |
tgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactg |
235 |
Q |
| |
|
|||||||||| || || ||| ||| ||||||||||| ||||||| || ||||||||||| ||||| | ||| | |||||||||||| |
|
|
| T |
2951965 |
tgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtgataggaacattag------------tcaatgaaagactg |
2951878 |
T |
|
| Q |
236 |
taaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaaccaaagttcaaagacaaacccaccat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||| | | |||||| ||| ||||| ||| ||| |
|
|
| T |
2951877 |
taaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtattataccagtacctaaccaaggtttaaagagctccccttcat |
2951778 |
T |
|
| Q |
336 |
agtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
| | || || | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951777 |
aacaggatgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttc |
2951714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 2974168 - 2973785
Alignment:
| Q |
1 |
actcggtagatgtattatctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
2974168 |
actcggtagatgtattatttgttcatcgatctgctctctactcggcctactttcaataggatgtttcaaatgaaatatcctaatcagatcattgaagtgc |
2974069 |
T |
|
| Q |
101 |
cttatactaatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttag |
200 |
Q |
| |
|
|||||||||||||| | ||||||| ||| |||| |||||||||| | || || ||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
2974068 |
attatactaatatcattgttatcaaaacccaattttggtttattgaaacattgaaagtaagcaatagtgagtttaagaaaagaatggatcatagtgttag |
2973969 |
T |
|
| Q |
201 |
gattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacc |
300 |
Q |
| |
|
|| || | | ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||| | |
|
|
| T |
2973968 |
ga--ac-------------agtcaatgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatatc |
2973884 |
T |
|
| Q |
301 |
atcatcgaaccaaagttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
|| || |||||| ||| |||| | || || | | ||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
2973883 |
attatataaccaaggttttaagagatcaccttcacaacaggatctcaataaatgttcaattataaaaccggaatccattaaaattaacttaacaagttc |
2973785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2937621 - 2937502
Alignment:
| Q |
1 |
actcggtagatgtattatctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2937621 |
actcggtagatgtattatctgttcgtcgatcgcttctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtga |
2937522 |
T |
|
| Q |
101 |
cttatactaatatcaccatc |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2937521 |
cttatactaatatcaccatc |
2937502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 2983015 - 2982881
Alignment:
| Q |
10 |
atgtattatctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatacta |
109 |
Q |
| |
|
|||||||||| ||| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2983015 |
atgtattatccgtttttcgatcttgactctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatacta |
2982916 |
T |
|
| Q |
110 |
atatcaccatcatcaaaaaacaagtttgatttatt |
144 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
2982915 |
atatcaccattatcaaaagacaattttgatttatt |
2982881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 399
Target Start/End: Complemental strand, 2982818 - 2982644
Alignment:
| Q |
225 |
atgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaaccaaagttcaaagac |
324 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| | |||| | | |||||| ||| ||||| |
|
|
| T |
2982818 |
atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatataatataagactttttaaccaaggttgaaagag |
2982719 |
T |
|
| Q |
325 |
aaacccaccatagtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
| ||||||||| | | |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2982718 |
agccccaccataatattttctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttc |
2982644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 2964309 - 2964260
Alignment:
| Q |
350 |
aaaagttcaattataaaagcggaatcgattaagattaacttaacaagttc |
399 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
2964309 |
aaaagttcaattataaaaccagaatcgattaagattaacttgacaagttc |
2964260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35159 - 35263
Alignment:
| Q |
1 |
actcggtagatgtattatctgttcgtcgatctcgtctctacttggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35159 |
actcggtagatgtattatctgttcgtcgatcttgtctctacttggctgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgc |
35258 |
T |
|
| Q |
101 |
cttat |
105 |
Q |
| |
|
||||| |
|
|
| T |
35259 |
cttat |
35263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 400
Target Start/End: Original strand, 35344 - 35531
Alignment:
| Q |
210 |
catttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatcatcgaa |
309 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | |||||||| |||| || |
|
|
| T |
35344 |
catttgtagaactccacgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaa |
35443 |
T |
|
| Q |
310 |
ccaaagttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaagttct |
400 |
Q |
| |
|
|||| |||| | | ||| | | || ||| || | ||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35444 |
ccaaggttctagg--aaatctttctta-aaatatttccaaaaaagttgaattataaaaccggaatcgattaagattaacttaacaagttct |
35531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 49618530 - 49618436
Alignment:
| Q |
50 |
ctttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttatt |
144 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
49618530 |
ctttcaataggatgttccaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaattttgatttatt |
49618436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 281
Target Start/End: Complemental strand, 49613546 - 49613323
Alignment:
| Q |
58 |
aggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaa |
157 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||| |||| || | ||| |
|
|
| T |
49613546 |
aggatgttgcaggtggaaaatcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtttgattgattgtaatatgcaaaa |
49613447 |
T |
|
| Q |
158 |
aaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaa |
257 |
Q |
| |
|
||| || | | |||||||||||| ||||||| |||| || ||| |||||| || |||||| | ||||||||| ||||||||| || |||||| |||| |
|
|
| T |
49613446 |
taatcaaaactaagttcaagaaaagaagggattttagtcttgggaacactagcgttagtagaagtaaatgaaagattgtaaatttcttgaataacaaaaa |
49613347 |
T |
|
| Q |
258 |
agggaagttgattttcaagtaaca |
281 |
Q |
| |
|
| || | ||||||||||||||||| |
|
|
| T |
49613346 |
atggcaattgattttcaagtaaca |
49613323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 49618361 - 49618306
Alignment:
| Q |
224 |
aatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaa |
279 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
49618361 |
aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaa |
49618306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 49618224 - 49618171
Alignment:
| Q |
342 |
atctcaagaaaagttcaattataaaagcggaatcgattaagattaacttaacaa |
395 |
Q |
| |
|
||||| ||||||| |||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
49618224 |
atctccagaaaagctcaattatgaacccggaatcaattaagattaacttaacaa |
49618171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 3339002 - 3338954
Alignment:
| Q |
350 |
aaaagttcaattataaaagcggaatcgattaagattaacttaacaagtt |
398 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3339002 |
aaaagttgaattataaaaccggaatcgattaagattaacttaacaagtt |
3338954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 3339129 - 3339092
Alignment:
| Q |
52 |
ttcaataggatgttgcaaatgaaatatcctaatcagat |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339129 |
ttcaataggatgttgcaaatgaaatatcctaatcagat |
3339092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 3339091 - 3339039
Alignment:
| Q |
249 |
taacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacca |
301 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| || ||||||| |
|
|
| T |
3339091 |
taacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatacca |
3339039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University