View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19469_low_7 (Length: 335)

Name: NF19469_low_7
Description: NF19469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19469_low_7
NF19469_low_7
[»] chr2 (14 HSPs)
chr2 (1-317)||(9079832-9080152)
chr2 (153-314)||(10474111-10474274)
chr2 (153-314)||(10545099-10545258)
chr2 (104-295)||(10518493-10518679)
chr2 (104-308)||(10507306-10507505)
chr2 (155-296)||(10848757-10848897)
chr2 (153-275)||(10463575-10463695)
chr2 (153-307)||(7476521-7476671)
chr2 (157-296)||(28105303-28105442)
chr2 (153-307)||(10492728-10492876)
chr2 (157-296)||(27967281-27967420)
chr2 (193-296)||(10860661-10860767)
chr2 (153-297)||(7478686-7478826)
chr2 (153-205)||(10507523-10507573)
[»] chr5 (2 HSPs)
chr5 (104-251)||(33602569-33602711)
chr5 (153-314)||(33575337-33575495)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 9079832 - 9080152
Alignment:
Q  1 aacaaattcaaatatgttttattcttgttttacattttagggtttgatccttgaggaaatccattttttgtccatgcacctatgaaggcagatgcatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079832 aacaaattcaaatatgttttattcttgttttacattttagggtttgatccttgaggaaatccattttttgtccatgcacctatgaaggcagatgcatttt 9079931  T
Q  101 ctgatatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattatttcgtgtgtgtagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9079932 ctgatatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattattttgtgtgtgtagg 9080031  T
Q  201 aagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagtgcttacaaatataaggtaattgttgaattaccttg----aattc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    |||||    
T  9080032 aagcagttcgtagggccaccatagcggagaagtttataccagtattcatgggaagtgcttacaaatataaggtaattgttgaattaccttgaattaattc 9080131  T
Q  297 tttgttttatggacttgatct 317  Q
    |||||||||||||||||||||    
T  9080132 tttgttttatggacttgatct 9080152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 153 - 314
Target Start/End: Complemental strand, 10474274 - 10474111
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgt--aggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatg 250  Q
    ||||| ||||||| |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  10474274 cttatcttgtaaacagttttctttttgttattattgtgtgtgtgtgtaggaagcagttcgtagggccaccatagcacggaagtttataccaatattcatg 10474175  T
Q  251 gtaagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttga 314  Q
    |  ||||||| ||| |||||||||| |||| ||||| ||||||||||||||| ||||| |||||    
T  10474174 ggcagtgctttcaagtataaggtaagtgttaaattaacttgaattctttgttgtatggtcttga 10474111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 153 - 314
Target Start/End: Complemental strand, 10545258 - 10545099
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 252  Q
    ||||| |||||||||||||| ||||||||||||||  |||| |||||||||| |||||  |||||||||||||   ||| ||||||||| | |||||||     
T  10545258 cttatcttgtaaatagttttatttttgttattatt--gtgtttgtaggaagctgttcgccgggccaccatagcacggaaatttataccatttttcatggg 10545161  T
Q  253 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttga 314  Q
     ||||||| || ||||||||||| |||| ||||||||||||||||||||| ||||| |||||    
T  10545160 cagtgctttcagatataaggtaactgttaaattaccttgaattctttgttgtatggtcttga 10545099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 10518679 - 10518493
Alignment:
Q  104 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaag 203  Q
    |||||||||| |||||||||||| ||| |||||  ||| | | |||| | |||||||||||||  |||||||||||||||||||  ||||||||||||||    
T  10518679 atatgaaaaccagttgttacttcgcccccaccc--cccattttcaaatc-ttattttgtaaattattttctttttgttattatt--gtgtgtgtaggaag 10518585  T
Q  204 cagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagtgcttacaaatataaggtaattgttgaattaccttgaatt 295  Q
    |||||||| |||||||||||||   ||| ||||||||| |  ||||||  ||||| | ||||||||||||||  |||||||| |||||||||    
T  10518584 cagttcgtcgggccaccatagcacggaaatttataccatttctcatgggcagtgcattcaaatataaggtaaccgttgaattgccttgaatt 10518493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 10507505 - 10507306
Alignment:
Q  104 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaag 203  Q
    |||| ||||| |||||||||||||||| |||||  ||| | | |||| | ||| ||||||| |  ||||||| |||||||||||  ||||||||||||||    
T  10507505 atataaaaaccagttgttacttctcccccaccc--cccattttcaaatc-ttaatttgtaagttattttcttgttgttattatt--gtgtgtgtaggaag 10507411  T
Q  204 cagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttt 303  Q
    |||||||| || ||||||||||   ||| |||||||| ||||||||||  ||||||| |||||| ||||||   |||||||| ||||||||||| ||||     
T  10507410 cagttcgtcggaccaccatagcacggaaatttatacccgtattcatgggcagtgctttcaaatacaaggtacccgttgaattgccttgaattctctgttg 10507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 296
Target Start/End: Complemental strand, 10848897 - 10848757
Alignment:
Q  155 tattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaa 254  Q
    ||||||| ||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||  | || |||||||||||||||||||       
T  10848897 tattttgaaaataattttctttttgttattatt----gtgtgtaggaagcagttcgtagggccaccatagcacacaaatttataccagtattcatgggtg 10848802  T
Q  255 gtgcttacaaat---ataaggtaattgttgaattaccttgaattc 296  Q
     ||||| |||||   |||||||||  ||||||| |||||||||||    
T  10848801 atgctttcaaatataataaggtaaacgttgaatcaccttgaattc 10848757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 10463695 - 10463575
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 252  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||||||||||| ||||||| ||||| |||||   ||| ||||||||| | |||||||     
T  10463695 cttattttgtaaataattttctttttgttattatt--gtgtttgtaggaagcaattcgtagagccacgatagcacggaaatttataccatttttcatggg 10463598  T
Q  253 aagtgcttacaaatataaggtaa 275  Q
     ||||||| ||||||||||||||    
T  10463597 tagtgctttcaaatataaggtaa 10463575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 7476521 - 7476671
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 252  Q
    |||||||||| | ||||||||||||||||||||||    |||||||||||||| ||| |||||| || |||||  |||| ||| |||| || |||||||     
T  7476521 cttattttgtcactagttttctttttgttattatt----gtgtgtaggaagcaattcatagggcaactatagcacagaaatttgtaccggttttcatggg 7476616  T
Q  253 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatg 307  Q
     ||||| | ||| ||||||||||  |||||||| |||||||||||||||| ||||    
T  7476617 tagtgcattcaagtataaggtaaccgttgaatttccttgaattctttgttatatg 7476671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 296
Target Start/End: Original strand, 28105303 - 28105442
Alignment:
Q  157 ttttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagt 256  Q
    |||| ||||||||||| || ||| ||||||||  ||||||||| | |||||||||||||||||||||||   |||||||||||||||||||||||  | |    
T  28105303 ttttttaaatagtttt-ttattgctattattt--tgtgtgtagaacgcagttcgtagggccaccatagcacggaagtttataccagtattcatgggtaat 28105399  T
Q  257 gcttacaaat---ataaggtaattgttgaattaccttgaattc 296  Q
    |||| | |||   |||||||||| |||||||||||||||||||    
T  28105400 gctttccaatataataaggtaatagttgaattaccttgaattc 28105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 10492876 - 10492728
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 252  Q
    ||||||| |||| ||||||||||||||||||| ||      |||||||||||| |||||||||| ||||||||  | || ||| |||| || |||||||     
T  10492876 cttatttggtaactagttttctttttgttattgtt------gtgtaggaagcaattcgtagggcaaccatagcacataaatttgtaccggttttcatggg 10492783  T
Q  253 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatg 307  Q
     ||||| | ||| ||||||||||  |||||||| |||||||||||||||| ||||    
T  10492782 tagtgcattcaagtataaggtaaccgttgaattgccttgaattctttgttatatg 10492728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 27967420 - 27967281
Alignment:
Q  157 ttttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagt 256  Q
    |||| ||||||||||| || ||| ||||||||  ||||||||| | |||||||||||||||||||||||  | ||||||||||||| ||||||||  | |    
T  27967420 ttttttaaatagtttt-ttattgctattattt--tgtgtgtagaacgcagttcgtagggccaccatagcacacaagtttataccagcattcatgggtaat 27967324  T
Q  257 gcttacaaat---ataaggtaattgttgaattaccttgaattc 296  Q
     ||| | |||   |||||||||| |||||||||||||||||||    
T  27967323 tctttccaatataataaggtaatagttgaattaccttgaattc 27967281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 10860767 - 10860661
Alignment:
Q  193 tgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaag---tgcttacaaatataaggtaattgttgaattacct 289  Q
    ||||||||||||||||||||||| |||||||||   ||| |||||||||||||||||||   |   ||||| ||||||||||||||   |||||||||||    
T  10860767 tgtgtaggaagcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggtggctatgctttcaaatataaggtaaccattgaattacct 10860668  T
Q  290 tgaattc 296  Q
    |||||||    
T  10860667 tgaattc 10860661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 7478686 - 7478826
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 252  Q
    |||||||||||| |||||||||||||||||||||    ||||||||||||||||||| |||||| |||| |||    || |||||||| || |||||||     
T  7478686 cttattttgtaactagttttctttttgttattat----tgtgtgtaggaagcagttcttagggcaaccagagcacgcaaatttataccggtcttcatggg 7478781  T
Q  253 aagtgcttacaaatataaggtaattgttgaattaccttgaattct 297  Q
     ||||||| | || |||||||||  |||||  | |||||||||||    
T  7478782 cagtgcttccgaaaataaggtaaccgttgatctgccttgaattct 7478826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 10507573 - 10507523
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagca 205  Q
    ||||||||||| |||| ||||||||||||||||||  || |||||||||||||    
T  10507573 cttattttgtatataggtttctttttgttattatt--gtatgtgtaggaagca 10507523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 33602711 - 33602569
Alignment:
Q  104 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaag 203  Q
    |||||||||| |||||||||||| ||| ||||| ||   ||| |||| | |||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  33602711 atatgaaaaccagttgttacttcgcccccacccgcca--tctacaaatc-ttatcttgtaaatagttttctttttgttattatt--gtgtgtgtaggaag 33602617  T
Q  204 cagttcgtagggccaccatagcggagaagtttataccagtattcatgg 251  Q
    ||||| ||||||||||||||||   ||||||||||||| |||||||||    
T  33602616 cagtttgtagggccaccatagcacggaagtttataccattattcatgg 33602569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 314
Target Start/End: Original strand, 33575337 - 33575495
Alignment:
Q  153 cttattttgtaaatagttttctttttgttattatttcgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 252  Q
    ||||| ||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||| ||| ||   || |||||||||| |||||||||     
T  33575337 cttatcttgtaaatagttttctttt-gttattatt--gtgtgtgtaggaagcagttcatagggccatcattgcacggaggtttataccattattcatggg 33575433  T
Q  253 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttga 314  Q
     ||||||  ||||||||||||||  ||| ||||| |||||||||  |||||||||| |||||    
T  33575434 cagtgctctcaaatataaggtaagcgttaaattaacttgaattccatgttttatggtcttga 33575495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University