View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_10 (Length: 575)
Name: NF1946_high_10
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 43502962 - 43502648
Alignment:
| Q |
1 |
ccttgatggtaacaatgttcttgtgaccagccaaatgatgcataatctgaatttctctgcgaacatcctcaacatcctccttggaaatgagcttcctctt |
100 |
Q |
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| T |
43502962 |
ccttgatggtaacaatgttcttgtgaccagccaaatgatgcataatctgaatttctctgcgaacatcctcaacatcctccttggaaatgagcttcctctt |
43502863 |
T |
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| Q |
101 |
agagatggatttgcaagcatattcaatggaggtggaattatcgatggctaagaaagtggtgccaaattgaccttgaccaagcttgcggccaagagtgtag |
200 |
Q |
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| T |
43502862 |
agagatggatttgcaagcatattcaatggaggtggaattatcgatggctaagaaagtggtgccaaattgaccttgaccaagcttgcggccaagagtgtag |
43502763 |
T |
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| Q |
201 |
agatcacgaatgttgggagtcttatgacctaagacataataagtctgattatcagggccgcggcgcatggcgtcgttcttaaagttgaaggaaggtggtg |
300 |
Q |
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| T |
43502762 |
agatcacgaatgttgggagtcttatgacctaagacataataagtctgattatcagggccgcggcgcatggcgtcgttcttaaagttgaaggaaggtggtg |
43502663 |
T |
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| Q |
301 |
gtgggggattgagtg |
315 |
Q |
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| T |
43502662 |
gtgggggattgagtg |
43502648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 385 - 542
Target Start/End: Complemental strand, 43502575 - 43502423
Alignment:
| Q |
385 |
cagagatgattgttcgctttgaagaatggtcaacaggctgggtatagccttcttgaatatatttaccttttaaagatccacgacatgtattgcccatcaa |
484 |
Q |
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| T |
43502575 |
cagagatgattgttcgctttgaagaatggtcaacaggctgggtatagccttcttgaatatatttaccttttaaagatccacgacatgtattgcccatcaa |
43502476 |
T |
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| Q |
485 |
tctctcatcgatgataagatcagatcagatcagatcagatttctctttctaaatcaaa |
542 |
Q |
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| T |
43502475 |
tctctcatcgattataagatcagatcagatc-----agatttctctttctaaatcaaa |
43502423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 18399977 - 18399922
Alignment:
| Q |
24 |
tgaccagccaaatgatgcataatctgaatttctctgcgaacatcctcaacatcctc |
79 |
Q |
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||||| |||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
18399977 |
tgaccggccaaatgatgcattatctgaatttctcttctcacatcctcaacatcctc |
18399922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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