View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_101 (Length: 296)
Name: NF1946_high_101
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_101 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 53089349 - 53089063
Alignment:
| Q |
18 |
aaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctc |
117 |
Q |
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| T |
53089349 |
aaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctc |
53089250 |
T |
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| Q |
118 |
aaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaac |
217 |
Q |
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| T |
53089249 |
aaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaac |
53089150 |
T |
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| Q |
218 |
tagccaagaagttccatg-----------------atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
287 |
Q |
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| T |
53089149 |
tagccaagaagttccatgatgagtgacgagtttgtatgaattttagcgagtataagtatgctatatgcatcacattaccagaataat |
53089063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 14334058 - 14333826
Alignment:
| Q |
18 |
aaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctc |
117 |
Q |
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| T |
14334058 |
aaaagttcaagatttgatgaagaattaatgatggaatttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctc |
14333959 |
T |
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| Q |
118 |
aaggt---------gttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaa |
208 |
Q |
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| T |
14333958 |
aaggtcatcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaa |
14333859 |
T |
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| Q |
209 |
aaagggaactagccaagaagttccatgatgaat |
241 |
Q |
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| T |
14333858 |
aaagggaactaaccaagaagttccatgatgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 14333814 - 14333763
Alignment:
| Q |
236 |
atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
287 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccagattaat |
14333763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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