View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_102 (Length: 296)
Name: NF1946_high_102
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_102 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 34747093 - 34747367
Alignment:
| Q |
11 |
tgaaatgaacaaaaatagcacatagtaatcaaaaaattatttgtactttcttttatatttgtatttcacaataactaactacatcaattcactatttgca |
110 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
34747093 |
tgaaatcaacaacaatagcacatagtaatcaaaaaattatttgtactttcttttatatttgtatttgacaataactaactacatcaattcattatttgca |
34747192 |
T |
|
| Q |
111 |
atagtagttattgtcaactcactctttaatctccttttcaaattccattcatatgctgcgaatacaaagtgttgcccttttattccctccaccaaagcta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747193 |
atagtagttattgtcaactcactctttaatctccttttcaaattccattcatatgctgcgaatacaaagtgttgcccttttattccctccaccaaagcta |
34747292 |
T |
|
| Q |
211 |
agttcatcatgtcttcaattttttaggtgtacaatttgtcttcaatttgacgtgacatgcgataaacaaatattt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34747293 |
agttcatcatgtcttcaattttttaggtgtacaatttgtcttcaatttgacgtgacatgtgataaacaaatattt |
34747367 |
T |
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