View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_105 (Length: 285)
Name: NF1946_high_105
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_105 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13156526 - 13156791
Alignment:
| Q |
1 |
taatatttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttttaact |
100 |
Q |
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| T |
13156526 |
taatatttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttttaact |
13156625 |
T |
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| Q |
101 |
atcaaaaatcacgtgtaaagtggatattctaaaaatatatatatgttcagagcatatctatgatttcttagaaataatcagaagtgtccagaatccaccg |
200 |
Q |
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| T |
13156626 |
ataaaaaatcacgtgtaaagtggatattctaaaaaaatatatatgttcagagcatatctatgatttcttagaaataatcagaagtgtccagaatccaccg |
13156725 |
T |
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| Q |
201 |
cattataatgactatgtgtcattcattgtccaaaagagaaagtagagattgtatgattactattatt |
267 |
Q |
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| T |
13156726 |
cattataatgactatgtgtcattca-tgtccaaaagagaaagtagagactgtatgattactattatt |
13156791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13161382 - 13161647
Alignment:
| Q |
1 |
taatatttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttttaact |
100 |
Q |
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| T |
13161382 |
taatatttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttttaact |
13161481 |
T |
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| Q |
101 |
atcaaaaatcacgtgtaaagtggatattctaaaaatatatatatgttcagagcatatctatgatttcttagaaataatcagaagtgtccagaatccaccg |
200 |
Q |
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| T |
13161482 |
ataaaaaatcacgtgtaaagtggatattctaaaaaaatatatatgttcagagcatatctatgatttcttagaaataatcagaagtgtccagaatccaccg |
13161581 |
T |
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| Q |
201 |
cattataatgactatgtgtcattcattgtccaaaagagaaagtagagattgtatgattactattatt |
267 |
Q |
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| T |
13161582 |
cattataatgactatgtgtcattca-tgtccaaaagagaaagtagagactgtatgattactattatt |
13161647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 13184311 - 13184405
Alignment:
| Q |
1 |
taatatttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttt |
95 |
Q |
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||||||||||| |||||||||||||||||||||||| | ||||||| |||||| | |||||||| || ||| || |||| ||||||||| |||| |
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| T |
13184311 |
taatatttcatagaaaactgtaaaccattaaattctttaattctcatgaaaattttaatttcaatttctacacaacaaatccaattatttgtttt |
13184405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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