View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_111 (Length: 254)
Name: NF1946_high_111
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_111 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 35387489 - 35387653
Alignment:
| Q |
90 |
tagtcttttccatgctaaatcccacctagatagaaactaaaaatgagaaaatacttgcttgttcacacaagcatttgaggacataattaagagatacgag |
189 |
Q |
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| T |
35387489 |
tagtcttttccatgctaaactccacctagatagaaactaaaaatgagaaaatacttgcttgctcacacaagcatttgaggacataattaagagataggag |
35387588 |
T |
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| Q |
190 |
tgaagataaaaagagagaataattaaattatttctatttttaaaattattagttaaaatatattt |
254 |
Q |
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| T |
35387589 |
tgaagataaaaagagagaataattaaattatttctatttttaaaattattagttaaaatatattt |
35387653 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 30272255 - 30272210
Alignment:
| Q |
15 |
cacagaggtaggtggagaagggtagtggtggaagatgatgtggaaaa |
61 |
Q |
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| T |
30272255 |
cacaaaggtagg-ggagaagggtggtggtggaagatgatgtggaaaa |
30272210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 36935776 - 36935743
Alignment:
| Q |
28 |
ggagaagggtagtggtggaagatgatgtggaaaa |
61 |
Q |
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| T |
36935776 |
ggagaagggtggtggtggaagatgatgtggaaaa |
36935743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 10608217 - 10608256
Alignment:
| Q |
22 |
gtaggtggagaagggtagtggtggaagatgatgtggaaaa |
61 |
Q |
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| T |
10608217 |
gtagggggagaagggtggtggtggaagatgatgtggaaaa |
10608256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 931082 - 931042
Alignment:
| Q |
15 |
cacagaggtaggtggagaagggtagtggtggaagatgatgt |
55 |
Q |
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| T |
931082 |
cacaaaggtagggggagaagggtggtggtggaagatgatgt |
931042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 25655529 - 25655571
Alignment:
| Q |
15 |
cacagaggtaggtggagaagggtagtggtggaagatgatgtgg |
57 |
Q |
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| T |
25655529 |
cacaaaggtagggggagaagggtggtggtggaagatgatgtgg |
25655571 |
T |
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