View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_120 (Length: 248)

Name: NF1946_high_120
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_120
NF1946_high_120
[»] chr8 (11 HSPs)
chr8 (1-234)||(17849465-17849697)
chr8 (121-231)||(26268752-26268863)
chr8 (154-231)||(16753053-16753132)
chr8 (117-201)||(31574211-31574296)
chr8 (154-231)||(590386-590465)
chr8 (154-231)||(4813019-4813098)
chr8 (131-197)||(21482080-21482147)
chr8 (154-231)||(25684216-25684295)
chr8 (154-197)||(41384450-41384493)
chr8 (154-231)||(28332204-28332283)
chr8 (68-104)||(17847385-17847421)
[»] chr7 (12 HSPs)
chr7 (154-231)||(44011288-44011366)
chr7 (91-192)||(11084181-11084283)
chr7 (154-231)||(25409723-25409802)
chr7 (154-231)||(3320581-3320660)
chr7 (125-196)||(6067671-6067742)
chr7 (154-231)||(7074360-7074439)
chr7 (154-231)||(25404966-25405045)
chr7 (154-231)||(30246562-30246641)
chr7 (156-197)||(24815625-24815666)
chr7 (154-197)||(20299112-20299155)
chr7 (154-197)||(28487206-28487249)
chr7 (155-234)||(6048351-6048431)
[»] chr2 (8 HSPs)
chr2 (70-152)||(33603653-33603735)
chr2 (154-231)||(17943130-17943209)
chr2 (154-231)||(39686556-39686635)
chr2 (154-231)||(28462845-28462923)
chr2 (70-152)||(45156802-45156883)
chr2 (154-197)||(6259355-6259398)
chr2 (154-201)||(13828838-13828885)
chr2 (133-234)||(28568729-28568831)
[»] chr3 (13 HSPs)
chr3 (156-234)||(14634705-14634784)
chr3 (154-231)||(10595542-10595621)
chr3 (154-221)||(16461784-16461852)
chr3 (154-221)||(54192828-54192896)
chr3 (154-231)||(10094599-10094678)
chr3 (154-231)||(10201485-10201564)
chr3 (131-201)||(4386453-4386524)
chr3 (109-152)||(7768289-7768332)
chr3 (154-231)||(10901318-10901397)
chr3 (131-197)||(25635079-25635146)
chr3 (154-197)||(42991910-42991953)
chr3 (132-197)||(23636684-23636750)
chr3 (155-219)||(15824150-15824215)
[»] chr6 (9 HSPs)
chr6 (70-195)||(24543101-24543226)
chr6 (154-234)||(11138078-11138159)
chr6 (154-231)||(35209091-35209170)
chr6 (154-231)||(13883048-13883127)
chr6 (154-231)||(31249244-31249323)
chr6 (154-231)||(35201856-35201935)
chr6 (154-231)||(22344793-22344872)
chr6 (156-201)||(28038258-28038303)
chr6 (154-195)||(30666434-30666475)
[»] chr4 (8 HSPs)
chr4 (154-231)||(4569644-4569722)
chr4 (154-231)||(36770930-36771008)
chr4 (155-221)||(3792417-3792484)
chr4 (132-197)||(36380118-36380184)
chr4 (154-197)||(14788021-14788064)
chr4 (154-231)||(16638470-16638548)
chr4 (156-216)||(16454988-16455047)
chr4 (156-216)||(18535339-18535398)
[»] chr1 (10 HSPs)
chr1 (154-231)||(2393813-2393891)
chr1 (110-197)||(25127552-25127639)
chr1 (154-231)||(9526037-9526116)
chr1 (134-197)||(8347810-8347874)
chr1 (154-197)||(6997171-6997214)
chr1 (154-197)||(27337532-27337575)
chr1 (154-197)||(31736115-31736158)
chr1 (155-221)||(47102264-47102331)
chr1 (156-197)||(50077195-50077236)
chr1 (158-221)||(47703318-47703382)
[»] chr5 (7 HSPs)
chr5 (133-197)||(18509886-18509950)
chr5 (71-151)||(21637933-21638013)
chr5 (154-197)||(27912176-27912219)
chr5 (154-231)||(40222335-40222413)
chr5 (154-197)||(18468655-18468698)
chr5 (154-197)||(26098841-26098884)
chr5 (155-222)||(22828711-22828779)
[»] scaffold0005 (1 HSPs)
scaffold0005 (154-197)||(51666-51709)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17849697 - 17849465
Alignment:
Q  1 ttccttgctgtatttcttctcactaaaaagaataggcacaaacgcaacataatcagatatgcacagtcagaatgggaagtgccaaatctggtccaaaaat 100  Q
    ||||||| || |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17849697 ttccttgttgcatttcttctcactaaaaa-aataggcagaaacgccacataatcagatatgcacagtcagaataggaagtgccaaatttggtccaaaaat 17849599  T
Q  101 cgtgatgtgattttggcagattcccaaacatcaattttgagtcacattcaactattctccaacttgactttaaattagtgatgatgtcaatttaacaatc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17849598 cgtgttgtgattttggcagattcccaaacatcaattttgagtcactttcaactattctccaccttgactctaaattagtgatgatgtcaatttaacaatc 17849499  T
Q  201 atcaccttgttgctctctccatccttcatcttcc 234  Q
    ||||||||| | ||||||||| ||||||||||||    
T  17849498 atcaccttgctactctctccacccttcatcttcc 17849465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 26268752 - 26268863
Alignment:
Q  121 ttcccaaacatcaattttgagtcacattcaactattctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctc 219  Q
    ||||||| | |||||||||||| || ||||||  ||||||| ||||||| |||||||||||||||| ||||||||| ||| ||||||||  |||||||||    
T  26268752 ttcccaatcttcaattttgagtaactttcaacatttctccaccttgactctaaattagtgatgatgccaatttaactatcaatcacctttctgctctctc 26268851  T
Q  220 catccttcatct 231  Q
    || |||||||||    
T  26268852 caaccttcatct 26268863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 16753053 - 16753132
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||||||||||||||||| |||||| ||| ||||||||| |||||||||| |||||||||||    
T  16753053 attctccaccttgacttcaaattagtgatgatgtcagtttaaccatcaatcaccttgctgctctctccaatccttcatct 16753132  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 31574211 - 31574296
Alignment:
Q  117 cagattcccaaacatcaattttgagtcacattca-actattctccaacttgactttaaattagtgatgatgtcaatttaacaatca 201  Q
    ||||||||||||| ||||||||||||||| |||| |  ||||| || ||||||| ||||||||| ||||||| |||||||||||||    
T  31574211 cagattcccaaacttcaattttgagtcactttcacaacattcttcaccttgactctaaattagtaatgatgttaatttaacaatca 31574296  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 590465 - 590386
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    ||||| || |||||||| |||| |||||||||||||||||||| |||| |||| ||| |||||||||| |||||||||||    
T  590465 attcttcaccttgacttcaaatcagtgatgatgtcaatttaaccatcagtcactttgctgctctctccaatccttcatct 590386  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 4813019 - 4813098
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  4813019 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 4813098  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 21482147 - 21482080
Alignment:
Q  131 tcaattttgagtcacattca-actattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    ||||||||||||||| |||| | || |||||| ||||||| |||||||||||||||| ||||||||||    
T  21482147 tcaattttgagtcactttcacaataatctccaccttgactctaaattagtgatgatgccaatttaaca 21482080  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 25684295 - 25684216
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||||| ||| |||||||||| |||||||||||    
T  25684295 attctccaccttgacttcaaatcagtgatgatgtcattttaaccatcaatcactttgctgctctctccaatccttcatct 25684216  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 41384493 - 41384450
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  41384493 attctccaccttgactctaaattagtgatgatgtcaatttaaca 41384450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 28332283 - 28332204
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| || ||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  28332283 attctccaccttgacttcaaatcagcgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 28332204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 17847421 - 17847385
Alignment:
Q  68 cagaatgggaagtgccaaatctggtccaaaaatcgtg 104  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  17847421 cagaatgggaagtgccaaatctagtccaaaaaacgtg 17847385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 44011288 - 44011366
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatct 231  Q
    |||||||| ||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  44011288 attctccaccttgactctaaaatagtgatgatgtcaatttaaccatcaatcaccttgttgctctctccaaccttcatct 44011366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 11084283 - 11084181
Alignment:
Q  91 gtccaaaaatcgtgatgtgattttggcagattcccaaacatcaattttgagtc-acattcaactattctccaacttgactttaaattagtgatgatgtca 189  Q
    |||||||||||||| |  ||||||||||||||||||||| || |||||||||| |  |||||| |||||||| |||||||||||||| | ||||||| ||    
T  11084283 gtccaaaaatcgtggtacgattttggcagattcccaaacttccattttgagtcaattttcaacaattctccaccttgactttaaattggcgatgatgcca 11084184  T
Q  190 att 192  Q
    |||    
T  11084183 att 11084181  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 25409802 - 25409723
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||    
T  25409802 attctccaccttgacttcaaatcagtgatgatgtcaatttaaccatcaatcactttgctgctctctccaatccttcatct 25409723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 3320581 - 3320660
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  3320581 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 3320660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 6067671 - 6067742
Alignment:
Q  125 caaacatcaattttgagtcacattcaactattctccaacttgactttaaattagtgatgatgtcaatttaac 196  Q
    ||||||||||||||||||||| || |||  |||||   ||| ||| ||||||||||||||||||||||||||    
T  6067671 caaacatcaattttgagtcactttaaacatttctcttcctttactctaaattagtgatgatgtcaatttaac 6067742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 7074439 - 7074360
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  7074439 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 7074360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 25405045 - 25404966
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  25405045 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 25404966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 30246641 - 30246562
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctc-catccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||||||||||||| ||| ||||| ||| |||||||||  |||||||||||    
T  30246641 attctccaccttgacttcaaatcagtgatgatgtcaatttaaccatcaatcactttgctgctctctctaatccttcatct 30246562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 24815625 - 24815666
Alignment:
Q  156 tctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  24815625 tctccaccttgactctaaattagtgatgatgtcaatttaaca 24815666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 20299155 - 20299112
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  20299155 attctccaccttgactctaaattagtgatgatgccaatttaaca 20299112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 28487249 - 28487206
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  28487249 attctccaccttgactctaaattagtgatgatgccaatttaaca 28487206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 6048431 - 6048351
Alignment:
Q  155 ttctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatcttcc 234  Q
    ||||||| ||||||| ||||||  |||||||||||||||||| ||| | ||  ||| ||||| |||||| |||||||||||    
T  6048431 ttctccaccttgactctaaatttatgatgatgtcaatttaaccatcaagcattttgctgctcgctccatgcttcatcttcc 6048351  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 33603735 - 33603653
Alignment:
Q  70 gaatgggaagtgccaaatctggtccaaaaatcgtgatgtgattttggcagattcccaaacatcaattttgagtcacattcaac 152  Q
    ||||||||||||||||||||||||||||||| ||| |  ||||||||||||||| ||||| ||||||||||| ||| ||||||    
T  33603735 gaatgggaagtgccaaatctggtccaaaaattgtgctacgattttggcagattctcaaacttcaattttgaggcactttcaac 33603653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 17943209 - 17943130
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||||| ||| |||||||||| |||||||||||    
T  17943209 attctccaccttgacttcaaatcagtgatgatgtcagtttaaccatcaatcactttgctgctctctccaatccttcatct 17943130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 39686635 - 39686556
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  39686635 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 39686556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 28462845 - 28462923
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||||||||||||| ||| ||||| ||| | | ||||||| |||||||||    
T  28462845 attctccaccttgacttcaaatcagtgatgatgtcaatttaaccatcaatcactttgcttccctctccaaccttcatct 28462923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 45156883 - 45156802
Alignment:
Q  70 gaatgggaagtgccaaatctggtccaaaaatcgtgatgtgattttggcagattcccaaacatcaattttgagtcacattcaac 152  Q
    |||||||||||||||| ||| |||||||  ||||| |  |||||||||||||||| |||| |||||||||| |||| ||||||    
T  45156883 gaatgggaagtgccaattctagtccaaat-tcgtgctacgattttggcagattcctaaacttcaattttgaatcactttcaac 45156802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 6259355 - 6259398
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||    
T  6259355 attctccaccttgactttaaatcagtgatgatgccaatttaaca 6259398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 13828838 - 13828885
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca 201  Q
    |||||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  13828838 attctccaccttgactctaaatttgtgatgatgtcaatttaaccatca 13828885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 28568729 - 28568831
Alignment:
Q  133 aattttgagtcacattcaactattctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatct 231  Q
    ||||||||||||  ||||||  ||||||| ||||||| | ||| |||||  ||| ||||||||| ||| ||| | ||| |||||||||||| ||||||||    
T  28568729 aattttgagtcaatttcaacatttctccaccttgactcttaatcagtgacaatgccaatttaaccatcaatcgctttgctgctctctccatgcttcatct 28568828  T
Q  232 tcc 234  Q
    |||    
T  28568829 tcc 28568831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 14634705 - 14634784
Alignment:
Q  156 tctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatcttcc 234  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||| | ||||| | |||||||||||    
T  14634705 tctccaccttgactctaaattagtgatgatgtcaatttaacgatcaatcaccttgttgatgtctccttgcttcatcttcc 14634784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 10595542 - 10595621
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||    
T  10595542 attctccaccttgacttcaaatcagtgatgatgtcaatttaaccatcaatcactttgctgctctctccaatccttcatct 10595621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 16461852 - 16461784
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcca 221  Q
    |||||||| |||||||| |||| |||||||||| ||||||||||||| ||||| ||| |||||||||||    
T  16461852 attctccaccttgacttcaaatcagtgatgatgccaatttaacaatcaatcactttgctgctctctcca 16461784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 54192896 - 54192828
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcca 221  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||||| |||||||||||||||    
T  54192896 attctccaccttgacttcaaatcagtgatgatgtcagtttaaccatcaatcactttgttgctctctcca 54192828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 10094599 - 10094678
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcca-tccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||||| ||||||||||    
T  10094599 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccagtccttcatct 10094678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 10201485 - 10201564
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcca-tccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||||| ||||||||||    
T  10201485 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccagtccttcatct 10201564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 4386524 - 4386453
Alignment:
Q  131 tcaattttgagtcac-attcaactattctccaacttgactttaaattagtgatgatgtcaatttaacaatca 201  Q
    ||||||||||||||  || ||||  ||||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  4386524 tcaattttgagtcagtatacaacatttctccaccttgactctaaattggtgatgatgtcaatttaaccatca 4386453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 7768332 - 7768289
Alignment:
Q  109 gattttggcagattcccaaacatcaattttgagtcacattcaac 152  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||    
T  7768332 gattttggtagattcccaaacttcaattttgagtcaccttcaac 7768289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 10901397 - 10901318
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| |||||  || |||||||||| |||||||||||    
T  10901397 attctccaccttgacttcaaatcagtgatgatgtcagtttaaccatcaatcactatgctgctctctccaatccttcatct 10901318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 25635146 - 25635079
Alignment:
Q  131 tcaattttgagtcacattca-actattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    ||||||||||||||| |||| |  | |||||| ||||||| |||||||||||||||| ||||||||||    
T  25635146 tcaattttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgccaatttaaca 25635079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 42991953 - 42991910
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    ||||| || ||||||| |||||||||||||||||||||||||||    
T  42991953 attcttcaccttgactctaaattagtgatgatgtcaatttaaca 42991910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 23636750 - 23636684
Alignment:
Q  132 caattttgagtcacattca-actattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||||||||| |||| |  | |||||| ||||||| |||||||||||||||| ||||||||||    
T  23636750 caattttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgccaatttaaca 23636684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 15824150 - 15824215
Alignment:
Q  155 ttctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctc 219  Q
    |||||||  |||||| ||||||||||||||||||||||| ||  || ||||| |||||||||||||    
T  15824150 ttctccacattgactctaaattagtgatgatgtcaattttaccgtcaatcactttgttgctctctc 15824215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 24543101 - 24543226
Alignment:
Q  70 gaatgggaagtgccaaatctggtccaaaaatcgtgatgtgattttggcagattcccaaacatcaattttgagtcacattc-aactattctccaacttgac 168  Q
    ||||| |||||| ||| |||||||||||| ||| | |  ||||||||||||||||||| | ||||||||||||||| ||| |||  ||||||| ||||||    
T  24543101 gaatgagaagtgtcaattctggtccaaaa-tcgggctacgattttggcagattcccaaccttcaattttgagtcactttctaacatttctccaccttgac 24543199  T
Q  169 tttaaattagtgatgatgtcaatttaa 195  Q
    | |||||||||||| ||  ||||||||    
T  24543200 tctaaattagtgataattccaatttaa 24543226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 11138159 - 11138078
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatcttcc 234  Q
    |||||||| ||| ||| |||||| ||||||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||    
T  11138159 attctccaccttaactctaaatttgtgatgatgtcaatttaaccatcaaccaccttgttgctctctccatgcttcaccttcc 11138078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 35209091 - 35209170
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||||||||| |||||||||| |||||||||||    
T  35209091 attctccaccttgacttcaaatcagtgatgatgtcagtttaaccatcaatcaccttgctgctctctccaatccttcatct 35209170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 13883127 - 13883048
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  13883127 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 13883048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 31249244 - 31249323
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  31249244 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 31249323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 35201856 - 35201935
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  35201856 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 35201935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 22344793 - 22344872
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatcat-cacctt-gttgctctctccatccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| ||||||||| ||||  |||||| | ||||||||||| |||||||||    
T  22344793 attctccaccttgacttcaaatcagtgatgatgccaatttaaccatcaaacacctttgctgctctctccaaccttcatct 22344872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 28038258 - 28038303
Alignment:
Q  156 tctccaacttgactttaaattagtgatgatgtcaatttaacaatca 201  Q
    |||||| |||||||||||||||||||||||  ||||||||| ||||    
T  28038258 tctccaccttgactttaaattagtgatgataccaatttaaccatca 28038303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 30666475 - 30666434
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaa 195  Q
    |||||||| |||||||||||| |||| |||||||||||||||    
T  30666475 attctccaccttgactttaaaatagtaatgatgtcaatttaa 30666434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 4569722 - 4569644
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctccatccttcatct 231  Q
    |||||||| |||||||| ||||||||||||||| ||||||||| ||| ||||| ||| ||||||||||| |||||||||    
T  4569722 attctccaccttgacttcaaattagtgatgatgccaatttaaccatcaatcactttgctgctctctccaaccttcatct 4569644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 36771008 - 36770930
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctccatccttcatct 231  Q
    ||||| || ||||||| |||| |||||||||||  |||||||| |||| |||||||||||||||||||| |||||||||    
T  36771008 attcttcaccttgactctaaaatagtgatgatgcaaatttaaccatcaatcaccttgttgctctctccaaccttcatct 36770930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 3792484 - 3792417
Alignment:
Q  155 ttctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcca 221  Q
    ||||||| ||||||| |||||||||| ||||||||||||||| ||| | ||||||| |||||||||||    
T  3792484 ttctccaccttgactctaaattagtggtgatgtcaatttaaccatcaaccaccttgctgctctctcca 3792417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 36380184 - 36380118
Alignment:
Q  132 caattttgagtcacattca-actattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||||||||| |||| |  | |||||| ||||||| |||||||||||||||||||||||||||    
T  36380184 caattttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtcaatttaaca 36380118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 14788021 - 14788064
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||    
T  14788021 attctccaccttgactctaaattagcgatgatgtcaatttaaca 14788064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 16638548 - 16638470
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctccatccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||  ||||||||| || | |||| ||| ||||||||||| |||||||||    
T  16638548 attctccaccttgacttcaaatgagtgatgattccaatttaaccataaatcactttgctgctctctccaaccttcatct 16638470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 16455047 - 16454988
Alignment:
Q  156 tctccaacttgactttaaattagtgatgatgtcaatttaacaatcatcaccttgttgctct 216  Q
    |||||| |||||||  ||||||||||||||| ||||||||| |||| ||||||| ||||||    
T  16455047 tctccaccttgactccaaattagtgatgatgccaatttaac-atcaacaccttgctgctct 16454988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 18535339 - 18535398
Alignment:
Q  156 tctccaacttgactttaaattagtgatgatgtcaatttaacaatcatcaccttgttgctct 216  Q
    |||||| ||||||| ||||||||||||| || ||||||||| |||| ||||||| ||||||    
T  18535339 tctccaccttgactctaaattagtgatgctgccaatttaac-atcaacaccttgctgctct 18535398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 2393813 - 2393891
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctccatccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| ||||||||| |||| |||| ||| ||||||||||| |||||||||    
T  2393813 attctccaccttgacttcaaatcagtgatgatgccaatttaaccatcaatcactttgctgctctctccaaccttcatct 2393891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 25127639 - 25127552
Alignment:
Q  110 attttggcagattcccaaacatcaattttgagtcacat-tcaactattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||| |||||||  |||||||||||||||||||  | ||||| | |||||| ||||||| ||||||||| |||||||||||||||||    
T  25127639 attttgacagattctgaaacatcaattttgagtcaattctcaac-aatctccaccttgactctaaattagttatgatgtcaatttaaca 25127552  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 9526116 - 9526037
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctcc-atccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| |||||||||||    
T  9526116 attctccaccttgacttcaaatcagtgatgatgccagtttaaccatcaatcaccttgctgctctctccaatccttcatct 9526037  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 8347810 - 8347874
Alignment:
Q  134 attttgagtcacattca-actattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||||||| |||| | || |||||| ||||||| |||||||||||||||| ||||||||||    
T  8347810 attttgagtcactttcacaataatctccaccttgactctaaattagtgatgatgccaatttaaca 8347874  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 6997214 - 6997171
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  6997214 attctccaccttgactctaaattagtgatgatgccaatttaaca 6997171  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 27337532 - 27337575
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  27337532 attctccaccttgactctaaattagtgatgatgccaatttaaca 27337575  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 31736115 - 31736158
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  31736115 attctccaccttgactctaaattagtgatgatgccaatttaaca 31736158  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 47102331 - 47102264
Alignment:
Q  155 ttctccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcca 221  Q
    ||||||| ||||||||  |||| ||||||||||||||||||| ||| | |||| ||||||||||||||    
T  47102331 ttctccaccttgacttctaattggtgatgatgtcaatttaaccatcaaccaccatgttgctctctcca 47102264  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 50077195 - 50077236
Alignment:
Q  156 tctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||| ||||||| |||||||||||||||| ||||||||||    
T  50077195 tctccaccttgactctaaattagtgatgatgccaatttaaca 50077236  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 47703382 - 47703318
Alignment:
Q  158 tccaacttgactttaaattagtgatgatgtcaatttaacaatc-atcaccttgttgctctctcca 221  Q
    |||| ||||||| |||||| ||| ||||||||||||||| ||| | ||||||| |||||||||||    
T  47703382 tccaccttgactctaaattggtggtgatgtcaatttaaccatcaaccaccttgctgctctctcca 47703318  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 18509886 - 18509950
Alignment:
Q  133 aattttgagtcacattcaactattctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||||||| | |  || |||||||| |||||||||||||||||||||||| ||||||||||    
T  18509886 aattttgagtcatactacaccattctccaccttgactttaaattagtgatgatgccaatttaaca 18509950  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 21637933 - 21638013
Alignment:
Q  71 aatgggaagtgccaaatctggtccaaaaatcgtgatgtgattttggcagattcccaaacatcaattttgagtcacattcaa 151  Q
    |||||||| ||||| || |||||| ||||||||| || ||||||  || ||||||||||||||||||||| |||| |||||    
T  21637933 aatgggaactgccagatttggtccgaaaatcgtgctgcgattttaacaaattcccaaacatcaattttgattcactttcaa 21638013  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 27912219 - 27912176
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  27912219 attctccaccttgactctaaattagtgatgatgtcaatttaaca 27912176  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 40222413 - 40222335
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaacaatca-tcaccttgttgctctctccatccttcatct 231  Q
    |||||||| |||||||| |||| |||||||||| |||| |||| |||| |||| ||| ||||||||||| |||||||||    
T  40222413 attctccaccttgacttcaaatcagtgatgatgccaatataaccatcaatcactttgctgctctctccaaccttcatct 40222335  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 18468698 - 18468655
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  18468698 attctccaccttgactctaaattagtgatgatgccaatttaaca 18468655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 26098841 - 26098884
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||    
T  26098841 attctccaccttgactctaaattagtgatgatgccaatttaaca 26098884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 22828779 - 22828711
Alignment:
Q  155 ttctccaacttgactttaaattagtgatgatgtcaatttaacaatcatc-accttgttgctctctccat 222  Q
    ||||||| ||||||| |||||| | ||| |||| |||||||| |||| | |||||||||||||||||||    
T  22828779 ttctccaccttgactctaaattggcgataatgttaatttaaccatcaaccaccttgttgctctctccat 22828711  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 51709 - 51666
Alignment:
Q  154 attctccaacttgactttaaattagtgatgatgtcaatttaaca 197  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||    
T  51709 attctccaccttgactctaaattagcgatgatgtcaatttaaca 51666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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