View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_123 (Length: 248)

Name: NF1946_high_123
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_123
NF1946_high_123
[»] chr7 (5 HSPs)
chr7 (38-248)||(432281-432492)
chr7 (100-138)||(20188236-20188274)
chr7 (36-74)||(48221657-48221695)
chr7 (20-48)||(432501-432529)
chr7 (36-72)||(20379576-20379612)
[»] chr3 (3 HSPs)
chr3 (38-118)||(46183177-46183255)
chr3 (37-73)||(44836406-44836442)
chr3 (38-138)||(36182758-36182856)
[»] chr5 (2 HSPs)
chr5 (104-142)||(25994436-25994474)
chr5 (104-138)||(25995073-25995107)
[»] chr4 (5 HSPs)
chr4 (100-138)||(52031632-52031670)
chr4 (104-138)||(18845340-18845374)
chr4 (104-138)||(18846237-18846271)
chr4 (104-138)||(20779971-20780005)
chr4 (104-138)||(32303801-32303835)
[»] chr1 (5 HSPs)
chr1 (38-77)||(702014-702053)
chr1 (104-138)||(21485670-21485704)
chr1 (104-138)||(42294617-42294651)
chr1 (38-78)||(22605384-22605424)
chr1 (102-138)||(30858370-30858405)
[»] chr8 (3 HSPs)
chr8 (104-138)||(43532518-43532552)
chr8 (36-74)||(43640932-43640970)
chr8 (36-73)||(28707053-28707090)
[»] chr2 (1 HSPs)
chr2 (36-74)||(42119289-42119327)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 248
Target Start/End: Complemental strand, 432492 - 432281
Alignment:
Q  38 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagggctattttggtcaggactgcagaggacgcgagtgttttgtggtgggtgaagagcagaatt 137  Q
    |||||| ||||||||||||||| ||||||||||||| | | ||||||||||| || |||||| |  ||||||||||||||||   |||||||||||||||    
T  432492 gcgtgagttaagtcacgctgcggaacttaagtcacgtatgactattttggtcggggctgcaggg--cgcgagtgttttgtgg---gtgaagagcagaatt 432398  T
Q  138 ccaaacattatagtcttgtttcaaatctaactaagaaatcctaatagtgtg------tgtatatatagtaacttcttctcttcctcatttgttgcatttg 231  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  432397 ccaaacattacagtcttgtttcaaatctaactaagaaaccctaatagtgtgtgtgtttgtatatatagtaacttcttctcttcctcatttgttgcatttg 432298  T
Q  232 cattggacggccgtagc 248  Q
    |||| ||||||||||||    
T  432297 catttgacggccgtagc 432281  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 20188274 - 20188236
Alignment:
Q  100 aggacgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  20188274 aggacgcgagtgttttgtgctgggtggagagcagaattc 20188236  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 48221657 - 48221695
Alignment:
Q  36 tagcgtgacttaagtcacgctgcgcaacttaagtcacgc 74  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  48221657 tagcgtgacttaagtcacgtagcgcaacttaagtcacgc 48221695  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 432529 - 432501
Alignment:
Q  20 aagggtgttttaaaactagcgtgacttaa 48  Q
    |||||||||||||||||||||||||||||    
T  432529 aagggtgttttaaaactagcgtgacttaa 432501  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 20379576 - 20379612
Alignment:
Q  36 tagcgtgacttaagtcacgctgcgcaacttaagtcac 72  Q
    |||||||||||||||||||  ||||||||||||||||    
T  20379576 tagcgtgacttaagtcacgtggcgcaacttaagtcac 20379612  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 46183177 - 46183255
Alignment:
Q  38 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagggctattttggtcaggactgcagaggacgcgagtgttttgtg 118  Q
    |||||| |||| ||||||||| ||||||| |||||| |||| ||||||||||||| ||||||||  |||||||||||||||    
T  46183177 gcgtgagttaaatcacgctgcacaacttacgtcacgtaggggtattttggtcagggctgcagag--cgcgagtgttttgtg 46183255  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 44836406 - 44836442
Alignment:
Q  37 agcgtgacttaagtcacgctgcgcaacttaagtcacg 73  Q
    ||||||||||||||||||| |||||||||||||||||    
T  44836406 agcgtgacttaagtcacgcagcgcaacttaagtcacg 44836442  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 36182856 - 36182758
Alignment:
Q  38 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagggctattttggtcaggactgcagaggacgcgagtgttttgtggtgggtgaagagcagaatt 137  Q
    |||||| |||||||||||||||  |||||| ||||||||||  ||||||| || | ||  | ||| |||||||||||||||  ||| |||||||| ||||    
T  36182856 gcgtgagttaagtcacgctgcgtgacttaactcacgcagggtcattttggacatggct--acagggcgcgagtgttttgtgcagggggaagagcaaaatt 36182759  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 25994474 - 25994436
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattccaaa 142  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  25994474 cgcgagtgttttgtgctgggtgaagagcagaattccaaa 25994436  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 25995073 - 25995107
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  25995073 cgcgagtgttttgtgctgggtgaagagcagaattc 25995107  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 52031670 - 52031632
Alignment:
Q  100 aggacgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  52031670 aggacgcgagtgttttgtgctgggtgaagagcagaattc 52031632  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 18845374 - 18845340
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  18845374 cgcgagtgttttgtgctgggtgaagagcagaattc 18845340  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 18846237 - 18846271
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  18846237 cgcgagtgttttgtgctgggtgaagagcagaattc 18846271  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 20779971 - 20780005
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  20779971 cgcgagtgttttgtgctgggtgaagagcagaattc 20780005  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 32303835 - 32303801
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  32303835 cgcgagtgttttgtgttgggtgaagagcagaattc 32303801  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 702014 - 702053
Alignment:
Q  38 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagg 77  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  702014 gcgtgagttaagtcacgctgcgcaacttaaatcacgcagg 702053  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 21485670 - 21485704
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  21485670 cgcgagtgttttgtgctgggtgaagagcagaattc 21485704  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 42294617 - 42294651
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  42294617 cgcgagtgttttgtgttgggtgaagagcagaattc 42294651  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 22605424 - 22605384
Alignment:
Q  38 gcgtgacttaagtcacgctgcgcaacttaagtcacgcaggg 78  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  22605424 gcgtgacttaagtcacgctgcgcgacttaactcacgtaggg 22605384  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 30858405 - 30858370
Alignment:
Q  102 gacgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30858405 gacgcgagtgttttgtggtggg-gaagagcagaattc 30858370  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 43532518 - 43532552
Alignment:
Q  104 cgcgagtgttttgtggtgggtgaagagcagaattc 138  Q
    ||||||||||||||| |||||||||||||||||||    
T  43532518 cgcgagtgttttgtgctgggtgaagagcagaattc 43532552  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 43640932 - 43640970
Alignment:
Q  36 tagcgtgacttaagtcacgctgcgcaacttaagtcacgc 74  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  43640932 tagcgtgacttaagtcacgtagcgcaacttaagtcacgc 43640970  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 28707053 - 28707090
Alignment:
Q  36 tagcgtgacttaagtcacgctgcgcaacttaagtcacg 73  Q
    |||||||||||||||||||  |||||||||||||||||    
T  28707053 tagcgtgacttaagtcacgtagcgcaacttaagtcacg 28707090  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 42119327 - 42119289
Alignment:
Q  36 tagcgtgacttaagtcacgctgcgcaacttaagtcacgc 74  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  42119327 tagcgtgacttaagtcacgtagcgcaacttaagtcacgc 42119289  T

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