View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_124 (Length: 248)
Name: NF1946_high_124
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_124 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 48967207 - 48967381
Alignment:
| Q |
1 |
caattttagtatgatcggtgaacgcaacacaattgttgttgtaattataccattaatcataatgcgttcaccgatcatgcttttctaataatttgaagat |
100 |
Q |
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| T |
48967207 |
caatttttgtatgatcggtgaacgcaacacaattgttgttgtaattataccatgaatcataatgcgttcaccgatcattcttttctaataatttgaagat |
48967306 |
T |
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| Q |
101 |
ttgagaccaggtccttttattctctaatccttaattcaaatcaattaagccactcaatttctccaattgtgttgg |
175 |
Q |
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| T |
48967307 |
ttgagaccaggtccttttattctctaatccttagttcaaatcaattaaactactcaatttctccaattgtgttgg |
48967381 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 48967820 - 48967883
Alignment:
| Q |
173 |
tggacacgctaggtagaaacctaagcccaatcctttagtctcttagccttaagtgttgaatatt |
236 |
Q |
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| T |
48967820 |
tggacatgctagatagaaacctaagcccaatcctttagtctcttagccttaagtgttgaatatt |
48967883 |
T |
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