View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_125 (Length: 247)
Name: NF1946_high_125
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_125 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 44291936 - 44292098
Alignment:
| Q |
1 |
gttcccatatcaaccgtcaacaccaccactattatcagacttattaagttttttggttttgaaggaatcagacttattaagttaacaaggacgtcgcaat |
100 |
Q |
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| T |
44291936 |
gttcccatatcaaccgtcaacaccaccactattatcagacttattaagttttttggttttgaaggaatcagacttattaagttaacaaggacgtcacaat |
44292035 |
T |
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| Q |
101 |
ttttaaataaatttatataaagcaatggtatttaactttgatatattgttatatcagctattg |
163 |
Q |
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| T |
44292036 |
ttttaaataaatttatataaagcaatggtatttaactttgatatattgttatatcagctattg |
44292098 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 44292119 - 44292178
Alignment:
| Q |
172 |
aagaaactaaattaatttagcctaaattggcataagagagaataaaatctaagttcttga |
231 |
Q |
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| T |
44292119 |
aagaaactaaattaatctagttcaaattggcacaagagagaataaaacctaagttcttga |
44292178 |
T |
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