View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_high_126 (Length: 246)
Name: NF1946_high_126
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_126 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 38909959 - 38909868
Alignment:
| Q |
139 |
aaccactatggatatgtaacttagcactttgcagccaaagatggacgtcgtgtcaccttctaaacttttgtcatcaataactttgtagctca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38909959 |
aaccactatggatatgtaacttagcactttgcagccaaagatggacgtcgtgtcaccttccaaacttttgtcatcaataactttgtagctca |
38909868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38910071 - 38910020
Alignment:
| Q |
1 |
cacacgtgtccaatagaaaatcacaatcccaacaagtcaccaactcttgcga |
52 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
38910071 |
cacacgtgtccaatagaaaatcacaatcctaacatgtcaccaactcttgcga |
38910020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 38910021 - 38909980
Alignment:
| Q |
77 |
gaggcggatcatcatgtgagtctatacataataaatcctaaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38910021 |
gaggcggatcaacatgtgagtctatacataataaatcctaaa |
38909980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University