View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_128 (Length: 245)
Name: NF1946_high_128
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_128 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 49580243 - 49580384
Alignment:
| Q |
88 |
atggcagcccttctaagttgatgagttccccaaccactttctcctcgtgtgctaattggcgttcttaatatataaatattctcaatttattatgcctgct |
187 |
Q |
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| T |
49580243 |
atggcagcccttctaagttgatgagttctccaaccactttctcctcgtgtgctaattggcgttcttaatatataaatattctcaatttattatgcctgct |
49580342 |
T |
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| Q |
188 |
agatgatcaaattagtggtggatgtatgatatgctatgtatc |
229 |
Q |
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| T |
49580343 |
agatgatcaaattagtggtggatgtatgatgtgatatgtatc |
49580384 |
T |
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Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 49579588 - 49579682
Alignment:
| Q |
1 |
aattaattaaattcttgcacgacttaataactatcaccacgtgcctctaactacataatataactatatgttttaaatataagcagtatggcagc |
95 |
Q |
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| T |
49579588 |
aattaattaaattcttgcatgacttaataactatcaacacgtgcctctaactacataatataactatatgttttaaatataagcagtatggcagc |
49579682 |
T |
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