View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_135 (Length: 238)
Name: NF1946_high_135
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_135 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 30337661 - 30337880
Alignment:
| Q |
17 |
attattaagcaaactttgcgtcacgtgggtgcgttaatttcaatattagaagaaaaatgtggggaatagaccaaattttaaagctatcaaatcatgcatg |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30337661 |
attattaagcaaacgttgcgtcacgtgggtgcgttaatttcaatattagaagaaaaatgtggggaatagaccaaattttaaagctttcaaatcatgcatg |
30337760 |
T |
|
| Q |
117 |
cacaatgtaaatcaaccaaacaagcctcaaagaaatccacaaatattttgtggctaaaacggattggatacatatgaatcttcaagccacaaattgtgag |
216 |
Q |
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|| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30337761 |
catagtgtaaatcaaccaaacaagcctaaaagaaatccacaaatattttgtggctaaaacggattggatacatatgaatcttcaagccacaaaatgtgag |
30337860 |
T |
|
| Q |
217 |
agttcgatctactacaatct |
236 |
Q |
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|||| ||||||||||||||| |
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| T |
30337861 |
agttggatctactacaatct |
30337880 |
T |
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