View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1946_high_137 (Length: 237)

Name: NF1946_high_137
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1946_high_137
NF1946_high_137
[»] chr6 (3 HSPs)
chr6 (132-219)||(31114580-31114667)
chr6 (6-64)||(31114681-31114739)
chr6 (105-217)||(31088499-31088611)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 31114667 - 31114580
Alignment:
Q  132 gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtgg 219  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31114667 gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtgg 31114580  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 31114739 - 31114681
Alignment:
Q  6 atggacatcatccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat 64  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31114739 atggacatcaaccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat 31114681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
Q  105 ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata 204  Q
    ||||||||| ||||||||||||||||  |||| |||||  | |||||||||||| ||| |||||||| |  |||| |||||| ||||||||| || || |    
T  31088611 ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca 31088512  T
Q  205 atggagagtgagt 217  Q
    |  ||||||||||    
T  31088511 acagagagtgagt 31088499  T

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