View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_138 (Length: 234)
Name: NF1946_high_138
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_138 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52012968 - 52013189
Alignment:
| Q |
1 |
cttctcatctctcttccttccaccaaaaacaagcttggagtaacaacaattcatccttatccactaatcatgccatcgttgatcttgaacctgatgatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52012968 |
cttctcatctctcttccttccaccaaaaacaagcttggagtaacaacaattcatccttatccactaatcatgccatcgttgatcttgaacctgatgatac |
52013067 |
T |
|
| Q |
101 |
cgttacttcttttgattatcttatggagaaagaagcgcttctacttggaacttcgaacgggcttttgttgctatttgatgttgatgcgaatgtgactcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52013068 |
cgttacttcttttgattatcttatggagaaagaagcgcttctacttggaacttcgaacgggcttttgttgctatttgatgttgatgcgaatgtgactcaa |
52013167 |
T |
|
| Q |
201 |
gttgttgggaatgttgatggtg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
52013168 |
gttgttgggaatgttgatggtg |
52013189 |
T |
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