View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1946_high_140 (Length: 232)
Name: NF1946_high_140
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_140 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 21565216 - 21565037
Alignment:
| Q |
28 |
atgcacgtcatcgcgctctacaaaagatgggtgcggaacaaccaccaggaaatctcttgaacttgagattccaattgctattgctccactccatgaaaat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21565216 |
atgcacgtcatcgcgctctacaaaagatgggtgcggaacaaccaccaggaaatctcttgagcttgagattccaattgttattgctccactccatgaaaat |
21565117 |
T |
|
| Q |
128 |
gcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcctagttgttgcaatcttctgcgcctttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21565116 |
gcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttc-------ttgcaatcttctgcgcctttg |
21565037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 13532832 - 13532707
Alignment:
| Q |
89 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
188 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||| || || |||||||||| | |
|
|
| T |
13532832 |
cttgagattccaatttcaattgctccactccatgaaaatgcacgttatcgtgcgctacctcgaacaccaattccaacacaggccttggtgtatgtttctt |
13532733 |
T |
|
| Q |
189 |
agttgttgcaatcttctgcgcctttg |
214 |
Q |
| |
|
||||| |||| |||| ||| |||||| |
|
|
| T |
13532732 |
agttgctgcagtcttttgcacctttg |
13532707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 19069295 - 19069420
Alignment:
| Q |
89 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
188 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||| | | |||||||||||||||| || || |||||||||| | |
|
|
| T |
19069295 |
cttgagattccaatttcaattgctccactccatgaaaatgcacgttatcgtgcgctaccttgaacaccaattccaacacaggccttggtgtatgtttctt |
19069394 |
T |
|
| Q |
189 |
agttgttgcaatcttctgcgcctttg |
214 |
Q |
| |
|
||||| |||| |||| |||||||||| |
|
|
| T |
19069395 |
agttgctgcagtcttttgcgcctttg |
19069420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 19117185 - 19117310
Alignment:
| Q |
89 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
188 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||| | | |||||||||||||||| || || |||||||||| | |
|
|
| T |
19117185 |
cttgagattccaatttcaattgctccactccatgaaaatgcacgttatcgtgcgctaccttgaacaccaattccaacacaggccttggtgtatgtttctt |
19117284 |
T |
|
| Q |
189 |
agttgttgcaatcttctgcgcctttg |
214 |
Q |
| |
|
||||| |||| |||| |||||||||| |
|
|
| T |
19117285 |
agttgctgcagtcttttgcgcctttg |
19117310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 34880616 - 34880674
Alignment:
| Q |
28 |
atgcacgtcatcgcgctctacaaaagatgggtgcggaacaaccaccag-gaaatctctt |
85 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
34880616 |
atgcacgtcaacgtgctctgcaaaagatgggtgcggaacaaccacaagtgaaatctctt |
34880674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 21808610 - 21808485
Alignment:
| Q |
89 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
188 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||| ||||| |||||| ||||||||| | |||||||||||||||| || || |||||||||| | |
|
|
| T |
21808610 |
cttgagattccaatttcaattcttccactccatgaaaatacacgttatcgtgcgctacctcgaacaccaattccaacacaggccttggtgtatgtttctt |
21808511 |
T |
|
| Q |
189 |
agttgttgcaatcttctgcgcctttg |
214 |
Q |
| |
|
||||| |||| |||| ||| |||||| |
|
|
| T |
21808510 |
agttgctgcactcttttgcacctttg |
21808485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 34216520 - 34216560
Alignment:
| Q |
125 |
aatgcacgtcatcgtgggctacctcggaaaccaattccaac |
165 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34216520 |
aatgcacgtcatcgtgtgctacctcggaaaccaattccaac |
34216560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University