View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1946_high_141 (Length: 228)
Name: NF1946_high_141
Description: NF1946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1946_high_141 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37345098 - 37345322
Alignment:
| Q |
1 |
tttattaagagatgtgttatttaaacacacaaaagttcgacattctataaaatacaattcagatgtgtgttgtgttagaatcagtaagaaagnnnnnnnc |
100 |
Q |
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| T |
37345098 |
tttattaaaagatgtgttatttaaacacacaaaagtttgacattctataaaatacaattgagatgtgt--tgtgttggaataagtaagaaagaaaaaa-c |
37345194 |
T |
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| Q |
101 |
aagtcaaaaaccgtatatacataccgtgttgatgtcggattttgtgtacatgaaacatttcccttttattaaatagtaagacaatgatttttgggtttat |
200 |
Q |
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| T |
37345195 |
aagtcaaaaaccgtatatacataccgtgttgatgtcggattttgtgtacatgaaacacttcccttttattaaatagtaagacaatgatttttgggtttat |
37345294 |
T |
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| Q |
201 |
atattttcccaacctctgacaaaacatt |
228 |
Q |
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| T |
37345295 |
atattttcccaacctctgacaaaacatt |
37345322 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 42462583 - 42462551
Alignment:
| Q |
113 |
gtatatacataccgtgttgatgtcggattttgt |
145 |
Q |
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| T |
42462583 |
gtatatacataccgtgttaatgtcggattttgt |
42462551 |
T |
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